GgaINT0070520 @ galGal4
Intron Retention
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8660127-8661912:-
Coord C1 exon
chr4:8661769-8661912
Coord A exon
chr4:8661311-8661768
Coord C2 exon
chr4:8660127-8661310
Length
458 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
ACTTGTTTTTGTTTGTTCAAAAA
3' ss Score
-0.96
Exon sequences
Seq C1 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACGGTAATGCAACACAATACCTGCAGATTTGTGATAGCATTAGCACTAATAGAGTGCTAAAACAAAAAACCAAGAAAAGGAGGAGAGGAGAGGCCAGGCAATGGCAAACAG
Seq A exon
GTAAACACTGTATGGTTATGTGTGCTCTCACAGAGTGGCACTTACTCCTTTACTATTCTTCTTTTTTTTTCTTTTTTTTTCCAAACTGGTTCAGAATTAAAAATCTAAGTGGTGATTTGCGGATTTCCTGTGTCCTTCCCCCTCCAATTCTGTGCATAGAGAATGTGGTAGGTTTTGCTACTGAAGTTAGCAACTTAGCATTGGTGTAATCCGTTTGAATGTTGCGAGTGATTAAAAAGTAATTGTGGACGTACTCACTGTACATGTGATATCACTTACCTATCTGAGCAGTTTCTAAAGCAAAACTATATAAACTGTAGGTGCTGTGCATTGGTTGTTTTTAAACTACTGATCTCTTGCTGCAAGTGTAAGTGCATGAATCTGAACAGCAGTTGGCTGATTTAAAACTTCTTAATCAGTAAACTTGTTTCCTTCATAACTTGTTTTTGTTTGTTCAA
Seq C2 exon
AAACAGCTGTTATAATAGGTCCTGATGGACAGCCCTTAACAGTTTACCCTTGTCATATATGTGGGAAAAAATTTAAATCCAGAGGATTCTTGAAAAGGCATATGAAGAATCATCCAGATCATATGATTAAGAAGAAATACCAGTGTACAGACTGTGACTTTACAACTAACAAAAAAGTAAGTTTCCACAATCATCTGGAAAGCCATAAACTTATAAATAAAGTTGATAAAACCCACGAGTTTACGGAATATACAAGAAGATACAGAGAAGCAAGCCCGTTGAGTTCTAATAAACTAATACTGAGGGACAAAGAGCCTAAACTGCACAAGTGCAAATATTGTGACTATGAAACCGCAGAGCAGGGGCTACTCAATAGACATCTACTTGCAGTTCACAGTAAGAACTTCCCTCACGTATGTGTGGAGTGTGGGAAAGGATTCCGTCATCCGTCAGAGCTGAAAAAGCATATGAGGACCCACACTGGGGAAAAGCCATACCAGTGTCAGCACTGTGTCTTCAGGTGTGCTGATCAGTCCAATCTGAAAACTCATATCAAAACCAAACACGGGAATGACTTGCCATTTAAATGTGAGCACTGTCCCCAGGCTTTTACAGATGAAAAGGAGCTGCAGCAGCACACGGAATTGTTTCAAGGGCATAAGACTCATCAGTGTCCACACTGTGACCATAAGAGCACCAACTCCAGTGACCTGAAGCGACACATTATTTCAGTTCATACAAAGGATTTTCCCCACAAATGCGAGGTATGTGAAAAAGGCTTCCATCGTCCATCAGAGCTCAAAAAGCATAGTGAAACCCATAAAGGTAAAAAGATACATCAGTGTAGACACTGTGACTTTAAAACGTCAGATCCTTTTATACTGAGCGGGCACATCCTCTCGGTTCACACCAAGGACCTGCCTTTTAAATGCAAAAGATGTAAAAGAGGATTTAGGCAGCAAACTGAACTTAAGAAGCACATGAAGACCCACAGTGGAAGAAAAGTTTATCAATGCCAGTATTGCGAATATAGCACTACGGATGCGTCAGGCTTTAAACGACACGTAATATCAATACACACAAAAGACTATCCACATAGGTGTGAGTATTGCAAAAAGGGATTCCGTAGACCATCAGAAAAAAATCAGCATATAATGAGGCACCACAGAGAGGCCATAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(13.7=93.9)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGAGGCCAGGCAAT
R:
TGCAGTTTAGGCTCTTTGTCCC
Band lengths:
354-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]