GgaALTD0003106-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17833295-17836126:-
Coord C1 exon
chr2:17836050-17836126
Coord A exon
chr2:17836044-17836049
Coord C2 exon
chr2:17833295-17833846
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
AAGTATTTTCTCTTACACAGAGG
3' ss Score
5.81
Exon sequences
Seq C1 exon
GCACGCAGGCATCACCACTTAATGCAGCTTCTACCAACCCTTTCCTGACAATTCATGGAGATAATGCAGCTCAGAAG
Seq A exon
GTGACA
Seq C2 exon
AGGCTCAATGATAAAACTGGACCAGTTGCATCAGAGAAGAGTTGACATTTGAGTGACACTTGAGAACTGCACGTCCTGCTGTGATAGCACTTCATCTGCCTGCAAACTGCAGTTTTCCTCTCTGCAGATATGAAGAAATGCAACAAGGAACTCCTACTGCACAGCAAGAGGTTAATAATTTTCATGAGGATATTTTTGGTAGGCTTTGATTTGCTTTCTTGTTGCACTAAAATTTTTCATGTTTCAGACTGTGAAGTAGATAGAACTCTGCGAACCACAGTTCTGTTGTCAGTACAATGGTAGTGAGTACAAGTTAAACCACAGTAAAACGTACACTTGACTTTGCAGTACTAATGTTAAAACGTAGAGGCGAGAGAACTGCCTGCAGGCACACATTACCTTGATTTCGGAGCAGGAGGGTTTCTTTGTTCTGTTTTGTTAATTAAAAAGCTCAACAGAAGCCCAAACGTAGCGTCTCATCTCTGCTGCAGTTGCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-34-50,35-50-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCACCACTTAATGCAGC
R:
TCTCTGATGCAACTGGTCCAG
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]