GgaALTD0003106-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17799470-17805505:-
Coord C1 exon
chr2:17805429-17805505
Coord A exon
chr2:17805423-17805428
Coord C2 exon
chr2:17799470-17803225
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
AAGTATTTTCTCTTACACAGAGG
3' ss Score
5.81
Exon sequences
Seq C1 exon
GCACGCAGGCATCACCACTTAATGCAGCTTCTACCAACCCTTTCCTGACAATTCATGGAGATAATGCAGCTCAGAAG
Seq A exon
GTGACA
Seq C2 exon
AGGCTCAATGATAAAACTGGACCAGTTGCATCAGAGAAGAGTTGACATTTGAGTGACACTTGAGAACTGCACGTCCTGCTGTGATAGCACTTCATCTGCCTGCAAACTGCAGTTTTCCTCTCTGCAGATATGAAGAAATGCAACAAGGAACTCCTACTGCACAGCAAGAGGTTAATAATTTTCATGAGGATATTTTTGGTAGGCTTTGATTTGCTTTCTTGTTGCACTAAAATTTTTCATGTTTCAGACTGTGAAGTAGATAGAACTCTGCGAACCACAGTTCTGTTGTCAGTACAATGGTAGTGAGTACAAGTTAAACCACAGTAAAACGTACACTTGACTTTGCAGTACTAATGTTAAAACGTAGAGGCGAGAGAACTGCCTGCAGGCACACATTACCTTGATTTCGGAGCAGGAGGGTTTCTTTGTTCTGTTTTGTTAATTAAAAAGCTCAACAGAAGCCCAAACGTAGCGTCTCATCTCTGCTGCAGTTGCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-52-67,53-67-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCACCACTTAATGCAGC
R:
TCTCTGATGCAACTGGTCCAG
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]