GgaALTD0003552-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19590858-19592295:+
Coord C1 exon
chr8:19590858-19590958
Coord A exon
chr8:19590959-19591004
Coord C2 exon
chr8:19592205-19592295
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCG
5' ss Score
0.96
3' ss Seq
TACATCTGCCTTTTGTTTAGATT
3' ss Score
6.94
Exon sequences
Seq C1 exon
CCTGCTAAGCCTCGCGTCGCTCTGGAAACATCACGGGCTCTTCGCCCGGCGCGCCGCTGCTGAAGGGCACCCCCTGGAGGCCCCGCCGGCGGTTCGGAAGA
Seq A exon
GTAAGGCTGCGCGCCTCCGATGAAATCTCGCCCTTCCCCGCCCCAG
Seq C2 exon
ATTGCAGCAAAAATTGGAGGAGATGCTGGTACATCCATGAATTCCAATGACTACGGTTATGGAGGACAAAAAAGACCTCTCGAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.989
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAAACATCACGGGCTC
R:
TCCTCCATAACCGTAGTCATTGGA
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]