GgaALTD0003552-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17790627-17792064:+
Coord C1 exon
chr8:17790627-17790727
Coord A exon
chr8:17790728-17790773
Coord C2 exon
chr8:17791974-17792064
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCG
5' ss Score
0.96
3' ss Seq
TACATCTGCCTTTTGTTTAGATT
3' ss Score
6.94
Exon sequences
Seq C1 exon
CCTGCTAAGCCTCGCGTCGCTCTGGAAACATCACGGGCTCTTCGCCCGGCGCGCCGCTGCTGAAGGGCACCCCCTGGAGGCCCCGCCGGCGGTTCGGAAGA
Seq A exon
GTAAGGCTGCGCGCCTCCGATGAAATCTCGCCCTTCCCCGCCCCAG
Seq C2 exon
ATTGCAGCAAAAATTGGAGGAGATGCTGGTACATCCATGAATTCCAATGACTACGGTTATGGAGGACAAAAAAGACCTCTCGAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAAACATCACGGGCTC
R:
TCCTCCATAACCGTAGTCATTGGA
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]