GgaALTD0003621-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009090 | UAP1L1
Description
NA
Coordinates
chr17:737293-739037:-
Coord C1 exon
chr17:738965-739037
Coord A exon
chr17:738897-738964
Coord C2 exon
chr17:737293-737478
Length
68 bp
Sequences
Splice sites
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
3' ss Seq
TTTCTCCCCTTTGCTGATAGGAA
3' ss Score
8.69
Exon sequences
Seq C1 exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTG
Seq A exon
GTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
Seq C2 exon
GAATTTTGTGGCATTTGAAGTTTTGAGAGAAGAGGAATTCTCGCCATTGAAAAATGCAGACACAGCTGAGACAGACAACCCTACCACTGCTCGGCAGTCCCTCCTGGCCCAGCACTACCGCTGGGCTCTCAAGGCTGGGGCCAGATTTCTGGATGAAGATGGCTGCAGGATACCAGAGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090-6-5,7-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(11.9=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCCATAAAGAAGGTGC
R:
CTTGAGAGCCCAGCGGTAGT
Band lengths:
180-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]