RnoALTD0032538-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012960 | Uap1l1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:RGD Symbol;Acc:1310630]
Coordinates
chr3:2581385-2582231:-
Coord C1 exon
chr3:2582159-2582231
Coord A exon
chr3:2582091-2582158
Coord C2 exon
chr3:2581385-2581570
Length
68 bp
Sequences
Splice sites
5' ss Seq
TAAGTTAGT
5' ss Score
0.88
3' ss Seq
TGAGCCCTTCTTTCCACCAGGAA
3' ss Score
9.11
Exon sequences
Seq C1 exon
GGAGTTTGAGCCCTTGCTGAAGCTGCATGTGGCTGTGAAGAAGGTTCCGTACGTGGATGAGGAGGGAAATCTG
Seq A exon
GTAAAGCCGCTAAGACCGAATGGGATAAAGATGGAGAAGTTTGTGTTTGATGTGCTCCCGTTTGCTAA
Seq C2 exon
GAACTTTGTTGCCTTTGAAGTGTGTCGGGAGGAGGAGTTCTCCCCACTGAAGAATGCTGACACAGCCGACAGGGACAATCCCTCCACCTCCAGGCGAGCCTTACTAGTTCAGCACTACCGCTGGGCTCTCCAGGCTGGAGCCCACTTCCTGGATGTACACGGGGTCCAGCTTCCGGAGCAGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012960-8-13,9-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(12.3=100)
A:
NA
C2:
PF0170413=UDPGP=PD(15.7=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGCATGTGGCTGTGAA
R:
GCTGAACTAGTAAGGCTCGCC
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]