GgaALTD0003660-1/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16574862-16617124:-
Coord C1 exon
chr7:16616984-16617124
Coord A exon
NA
Coord C2 exon
chr7:16574862-16575097
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGT
5' ss Score
9
3' ss Seq
CTTTCACGTTTTTCTTTAAGGTG
3' ss Score
10.5
Exon sequences
Seq C1 exon
NNNNNNNNNNACGTCCTTTTACATCCCCGCGCGGACCTGACCGNGGTTCCGTCAGGGTGCTCGCCGCCCGCNGCAGCCCCGCTTCGTGACCCTGAGATTCGCTCCACGCCGTCCCCTCCTGCCGGGCCCTTCGTCCCCGCG
Seq A exon
NA
Seq C2 exon
GTGAAGTTCAGCTGAGTTTGAAGTCTTTTGGAGGTCCGTAAACTGTGAAACAGAAGAATGCAGAAGAGTATCCCTTGCATTTTTGTACATGAGTGACAAGAGCACAAAATCGTTACTGCTAGTGTGCTGCGAAGATGAGTTCGGAGGAGAAGAGTATATCTCCTGCTCACAAAACTTCCACACCATCACATAGAAGTGCCTCCTCTTCATCATCATCTCAGAGGGATAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-1-2,2-2,3-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGACCCTGAGATTCGC
R:
ACGGACCTCCAAAAGACTTCA
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]