GgaEX0013489 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16574862-16616878:-
Coord C1 exon
chr7:16616778-16616878
Coord A exon
chr7:16614979-16615048
Coord C2 exon
chr7:16574862-16575097
Length
70 bp
Sequences
Splice sites
3' ss Seq
CGGTGTAACTTTGCTCGCAGGTG
3' ss Score
8.23
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGGCGGGGAGCTGCGGCGGGCGGGAGGGAACGAGGCAGCGGGAACGGCGGGGCGCAGCCGCCGGGCCGCAGCGGGGATGCGCCACGGATGCCGGCGAGGAG
Seq A exon
GTGTTAGAGGTACTGTGTGACTGAGCAGCCTCTTTGGACCTTCCTGCAAAGACACCATGGCCATGGGAAG
Seq C2 exon
GTGAAGTTCAGCTGAGTTTGAAGTCTTTTGGAGGTCCGTAAACTGTGAAACAGAAGAATGCAGAAGAGTATCCCTTGCATTTTTGTACATGAGTGACAAGAGCACAAAATCGTTACTGCTAGTGTGCTGCGAAGATGAGTTCGGAGGAGAAGAGTATATCTCCTGCTCACAAAACTTCCACACCATCACATAGAAGTGCCTCCTCTTCATCATCATCTCAGAGGGATAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'3-2,'3-1,4-2
Average complexity
C2
Mappability confidence:
88%=75=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGGCAGCGGGAAC
R:
TGTGCTCTTGTCACTCATGTACA
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]