GgaEX0013489 @ galGal4
Exon Skipping
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14935828-15019447:-
Coord C1 exon
chr7:15019347-15019447
Coord A exon
chr7:15017548-15017617
Coord C2 exon
chr7:14935828-14977668
Length
70 bp
Sequences
Splice sites
3' ss Seq
CGGTGTAACTTTGCTCGCAGGTG
3' ss Score
8.23
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGGCGGGGAGCTGCGGCGGGCGGGAGGGAACGAGGCAGCGGGAACGGCGGGGCGCAGCCGCCGGGCCGCAGCGGGGATGCGCCACGGATGCCGGCGAGGAG
Seq A exon
GTGTTAGAGGTACTGTGTGACTGAGCAGCCTCTTTGGACCTTCCTGCAAAGACACCATGGCCATGGGAAG
Seq C2 exon
GTGAAGTTCAGCTGAGTTTGAAGTCTTTTGGAGGTCCGTAAACTGTGAAACAGAAGAATGCAGAAGAGTATCCCTTGCATTTTTGTACATGAGTGACAAGAGCACAAAATCGTTACTGCTAGTGTGCTGCGAAGATGAGTTCGGAGGAGAAGAGTATATCTCCTGCTCACAAAACTTCCACACCATCACATAGAAGTGCCTCCTCTTCATCATCATCTCAGAGGGATAGGAGGCAGGTAAGGAAAAAATTCTGACCTTTGAGATGTCTGGTGGAATTATTTATTCCTGTAGAGTGGTCATTCATTATTGCTGACTCTGAATTCTTTTGCTCACAGCACTGGACGTGGTCACTATAGCCAAGAGTTGTTGCTTCTTCCCCCCCCACCCCCATGCATTAGTTTAAAAAAAGATTCATAAGCACCATAGGCACTAAGCATAGTACTGTAGCAAGAAGAATATAATCATGTGAACAAACAGGAAATGAGCTCTGACATCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.486
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGGCAGCGGGAAC
R:
TGTGCTCTTGTCACTCATGTACA
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]