GgaALTD0003932-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009841 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr7:18144997-18145601:+
Coord C1 exon
chr7:18144997-18145097
Coord A exon
chr7:18145098-18145201
Coord C2 exon
chr7:18145533-18145601
Length
104 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTCTTTGATTTTTCTGAAGGCT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GGAACAAGGCCAGGCTTTCTGAAAAACACGTGGGAATTGCATTGAACGTACTATGGCAGTTGCAGAAGAAGAAGCCACTTCTCTTAAGGACTTCTGACTAT
Seq A exon
GTAAGAAATCACTCCCAGTTTCTAACTCTTTGCTTTTTAGCAGAAAACAAAGTAGAACACATGGATAATGAGACAATAGTGGACACTCTGTATAGTGTACTGAG
Seq C2 exon
GCTCAGTGTGGAAAGCCATGATTCACTGGCAGGAGTGCTCGTTACAGAAGCGTGGAAAAGATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAAGGCCAGGCTTTCTG
R:
CTTTCTAATCTTTTCCACGCTTCTGT
Band lengths:
170-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]