MmuALTD0005384-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69549551-69550284:-
Coord C1 exon
chr2:69550184-69550284
Coord A exon
NA
Coord C2 exon
chr2:69549551-69549619
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTTTCCTTGTTTTTATTGAGGTT
3' ss Score
0.87
Exon sequences
Seq C1 exon
AGAAACCATCCTCAGTTTCTTACTCTTTGCAGCATTACAACAAATCACATCCCAGCAATGAGTGATGCTACCCTGGTGGATGTGTTATACAGCATAAAGCA
Seq A exon
NA
Seq C2 exon
GTTTGCAGTTGAATCCCATCACCCACTAATCGAAGCACTGGTTACAGAAGCATGGAAAAGACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF073196=DnaI_N=WD(100=59.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: