GgaALTD0003993-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30660950-30664028:-
Coord C1 exon
chr4:30663851-30664028
Coord A exon
chr4:30663838-30663850
Coord C2 exon
chr4:30660950-30661050
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAAGTACAC
5' ss Score
-0.15
3' ss Seq
TTCTCTTTTCTCTGTGCCAGGTG
3' ss Score
11.93
Exon sequences
Seq C1 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
Seq A exon
GTAAGGAAAGCAA
Seq C2 exon
GTGCCCATTCTGCATCTACTCCACTAACCGCCCTGCAGCAATGGAGTGCCACCTGAAGACTCACTACAAGATGGAGTACAAATGTCGGATCTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-24-26,25-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGCCACACTGTCCCC
R:
AGTGAGTCTTCAGGTGGCACT
Band lengths:
100-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]