GgaALTD0003993-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32336488-32340145:-
Coord C1 exon
chr4:32339968-32340145
Coord A exon
chr4:32339959-32339967
Coord C2 exon
chr4:32336488-32337099
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
3' ss Seq
TTCTCTTTTCTCTGTGCCAGGTG
3' ss Score
11.93
Exon sequences
Seq C1 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
Seq A exon
GTAAGGAAA
Seq C2 exon
GTGCCCATTCTGCATCTACTCCACTAACCGCCCTGCAGCAATGGAGTGCCACCTGAAGACTCACTACAAGATGGAGTACAAATGTCGGATCTGCCAGACAGTGAAAGCAAATCAGCTGGAGCTGGAGATGCACATCCGAGAACACCGCCTTGGCAACCATTACAAGTGTGACCAGTGTGGCTACCTGTCCAAGACCGCCAACAAGCTGATAGAACACGTGCGTGTCCACACTGGTGAGCGCCCTTTTCACTGTGACCAGTGCAGCTACAGCTGCAAACGCAAAGACAATCTCAACTTGCACAAGAAACTGAAGCATGCTCCACGCCAGACTTTCAGCTGCGACGAGTGCCTGTTCAAGACTACCCACCCTTTTGTTTTCAGCCGCCACGTGAAGAAGCACCAGAATGGGGACTGTTCTGAAGAGGAGAAGAAGGGCCAGTATTCAGCCTCTAAGGAAGCCAGTCCGCTCCTACCAGTGAACAGCTCCAGAAACCTCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-14-17,15-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGCCACACTGTCCCC
R:
AGTGAGTCTTCAGGTGGCACT
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]