GgaEX1065634 @ galGal3
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32339169-32340433:-
Coord C1 exon
chr4:32340242-32340433
Coord A exon
chr4:32339968-32340145
Coord C2 exon
chr4:32339169-32339181
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCATTTTTCAGGCT
3' ss Score
11.37
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGAGGAGAGGAAGACACCCAGTGACTCTAACAGTCCATCTTCATCTTCACTGTCAGCACTCAGTGACTCTGCTAACAGCAAAGAAGATGCAGATATTTCTCCAAAAAACAAGGGTTCAAACAACCTGCTGGTCATTTCTGTAGTGCCTGGTACTCAGACCTCACTGAATACTGAAGAGAAGTCAGAGAAAG
Seq A exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
Seq C2 exon
GAAAAGAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'13-15,'13-14,14-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=PD(26.9=53.8)
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]