MmuEX6036577 @ mm10
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79185598-79188181:+
Coord C1 exon
chr8:79185598-79185789
Coord A exon
chr8:79186176-79186353
Coord C2 exon
chr8:79188149-79188181
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCCAGCTTCGGTCCTTTCAGGGT
3' ss Score
7.55
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGATGATAGGAAGACCCCCAGTGAATCGAACAGCCCCTCTTCATCCTCCCTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGCGGGAACAACTTGCTGGTCATCTCTGTGGTGCCCGGGAGCCAGCCCTCACTGAACAACGAGGAAAAGCCAGAGAAAG
Seq A exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq C2 exon
CTCAGGACAGTGGTGAGTGTCAGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'31-38,'31-31,32-38=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.663 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=PD(0.1=0.0)
A:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGATAGGAAGACCCCCA
R:
AGTCTGACACTCACCACTGTCC
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types