GgaEX1065634 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30656085-30667445:-
Coord C1 exon
chr4:30667279-30667445
Coord A exon
chr4:30663851-30664028
Coord C2 exon
chr4:30656085-30661050
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCATTTTTCAGGCT
3' ss Score
11.37
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGTCACGTGTGTGGGTTTGAGACGGAGATGAATGTCCAGTTTGTCAGTCATATGTCCCTCCACGTGGATAAGGAGCAGTGGATGTTCTCGATTTGCTGCACAGCATGCGATTTTGTCACCATGGAAGAGGCAGATATGAAGGCTCATGTCAACAGCAAGCACACAG
Seq A exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
Seq C2 exon
GTGCCCATTCTGCATCTACTCCACTAACCGCCCTGCAGCAATGGAGTGCCACCTGAAGACTCACTACAAGATGGAGTACAAATGTCGGATCTGCCAGACAGTGAAAGCAAATCAGCTGGAGCTGGAGATGCACATCCGAGAACACCGCCTTGGCAACCATTACAAGTGTGACCAGTGTGGCTACCTGTCCAAGACCGCCAACAAGCTGATAGAACACGTGCGTGTCCACACTGGTGAGCGCCCTTTTCACTGTGACCAGTGCAGCTACAGCTGCAAACGCAAAGACAATCTCAACTTGCACAAGAAACTGAAGCATGCTCCACGCCAGACTTTCAGCTGCGACGAGTGCCTGTTCAAGACTACCCACCCTTTTGTTTTCAGCCGCCACGTGAAGAAGCACCAGAATGGGGACTGTTCTGAAGAGGAGAAGAAGGGCCAGTATTCAGCCTCTAAGGAAGCCAGTCCGCTCCTACCAGTGAACAGCTCCAGAAACCTCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=FE(42.4=100)
A:
NO
C2:
NA
Main Skipping Isoform:
ENSGALT00000016223fB14063
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTCCACGTGGATAAGGA
R:
GATGTGCATCTCCAGCTCCAG
Band lengths:
249-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]