GgaINT0076314 @ galGal4
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30664125-30667445:-
Coord C1 exon
chr4:30667279-30667445
Coord A exon
chr4:30664317-30667278
Coord C2 exon
chr4:30664125-30664316
Length
2962 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TCCTAATTCCAATTTTTCAGCTG
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTGTCACGTGTGTGGGTTTGAGACGGAGATGAATGTCCAGTTTGTCAGTCATATGTCCCTCCACGTGGATAAGGAGCAGTGGATGTTCTCGATTTGCTGCACAGCATGCGATTTTGTCACCATGGAAGAGGCAGATATGAAGGCTCATGTCAACAGCAAGCACACAG
Seq A exon
GTGATGATCCCCATCTCCCAGCTGCAGTGATCTCTCTCTTCCCTGCTTTTTAGGTGCAACCTTCACACTTCTCATAAGCACTCTCTTTACTTTCACTGAAACGCTTGCTAATTAAGGCCTGATCTCTCAAAGCTGAAGTGAAGCCAGGCAAATAGTCTGCTAGTACAGATCAGTTTTCAAGCGCAGAGGACAAATGAAGGGCTACTTCACCTTCCTTCCCCATGTCCCTCAAGTCTCCTCCCTTGCTGAAGTTAACATACATTGTTTGTTTTTCTGACTGATTTACTGTTTCATCAGAATCCTGATTTGCCCTCAGTAATGATAAGGCAACTGTGAGCGCTATCTGTGCATATCTGGCTTTAAGGTTATAACACGCAATATACTGAGCTTTGCTCTTGGTGTGTTCGGAGTTTCCTGTTGATGTTTCTTTGATGCTGTGACTCAGAAATACTTTAAATGTCACTTTATATTCAGTATCAGAACAAGTCCTGTGTCTTCTCCCTGGTCCTGTTCTTAGTCAAGTAATAGCCAAAGATAAGAACAGAAGTTTTCGAACAAGCTCCATATGCTTAGTCTAACTAGTGAACCCTGGCATAATTTAAGGAGAAGAAAATTAGAATGCTTTCAGTTGATTTCTTTTATAACACCAAGCAGAAGAATTTTGCTGTCACAAACTACTAATAATTGCATTGACAGTTCTGAAGCTGAACTGCATCCAGAACAATTTTCCCATTATTAAATTGCTCTCTGTGTCTTACCAAGGGTAAAACTGGGAAGATAGGATGGGTGAAAAGAGAGGGGAATGTTTGTGCTTACAACTGTATAAGTAAGTTAAATTATTGGAATGCCCTCACAGATTTTTGTGCCAGTGTAGCTTTCAGCACTCCAACTCTGCTCCCATCTCCCTGCACTCACACTGTCTTTACCCCATTCTTTCATCCATCTCCACATGTAGATGGAGAAATGCCATCTGTAGCCATGTGAAAAGTTTGCATCAGAGCTCAAAAAAGAGCTGTACTTGAGTGTATCTTCCTGTTACGGCTAAAATATTGGAGATGCTGCTTGTCTTTTAAAGCTTATCTTTTAATTATCTGTTCTTCATTCACTCTGTCAAATTGAGCCATTCAGCAGGAGATCCCACCAAATGCTTACACGTATGGCAGGTACTGGGGGAAAAAGACACAATAGGTTTTCTGGGTCACTTGCCTCCAGTCCCTAGCCTGTAAGGTTACTGAGCAATAAAAGGCCTGTTTGTAAGGCTCTTGGCATATGTCTTCAGGCAAGTAGAATTGTTTTGGACCAGCTATCCCCACAGACAGATAGCTGCAGATTTTCTGGTATTAAAGATGAGGTACCTTTTTAAAATTCCCAGCACGCATCTTATTAATAATCAGGACTCACACACATTCTTTTCTGCCAGAACTGCCTTCAGTCTGAAACATCAGCCCACCTCCCTCCACCTTTTTTCTCCCCTCCCACAGTATTTATTCCCTCCCTGTATTTCTGGAGAACAACCCTCTCCCATCTAAACGTTCATTGAGCCTTTTCTTACGTGAAATACTCTTCTCAAAGTACCGATCCTTCACTGTGTGCGTTCTTGTTAGATTCCCATTCTTGGCATACACAACTATAGCTGTATGTGGTATATTTAGTTGGAATTAGTGGTGGTGGCAAAGTAAAACAGCAGAAGCTACTGGGAATAACTCACACAGTAATATTCTGTGATCATATTTACCTCCCTTGGAGACTTTAACATGCTGATAGCTCATATTCATCCTGTGTTCTGCTCAACTTCTTTTTTTATTTTGTTTTCCTTGACTGTTTCCAACTTAAGCACTCCTCATTTGTAGCAAAAAATTCTTGTTACTGGCCCTCCAGGTCATAACCTTGTAGTCTGTACTATTAAATTTCATTCCATTTTTATTACTCCAGTCCCCAAGGTCAGTGAGTCTTTCTGTATGATATCCCAGTCATCCTTCCTATTGACAGCATGGGTCATCAGATTTCATTAGCACGTTCCTACATTTTTTTTCTAGACTTAAAGGTGCCACTCATGAGTTTTTAGCTAGGTACATAGTGCTGATTGCAGAGGCCTCAGTCGGAGGACTTACTTTATCACATAGATAATATGACATTTTAGTGAAGTCTGTTTTTAACAGAGCTCTGAATAAAGCGTGACATAGATGGGAAGAAATAATTTGCCCATCCTGATTCTTTGGCTCACAGCAGAAAATACCAGACTAGGCTTATATGAGAACTCTCACTCTTGCTCATTTCTAGTGTGTGATACCATTTGGGATTCAGACTTCATACATTTATTGCACACATAAGGCAACGCTGGAGTGCTACAGCTTTAGATCCAGTTAAATATGTTTTGTTGTTTTTTTCACTTAATATTCAATGAGAGTTCCTAGCAACAACAGATACATCTCAAGACCACACAGTCATTATTGAGGCTGCATCCTCAGTACGCTGAGTGTGATTTTTCTCCTTTACCCTTCCTCTCAGAGCTATTCAGTGGACAGATATAAGCAGAAAGGTGGTGGAAGTTTAGTTTGGAACGCTAATAAACTATGCCATCAGCAGCACCCCAACCTCCACTTGTGAGAACTTCACTTTCTTTCTCAGTGACAAGTTCTTGATTGTCTGAGCTAATCAACGTGTGTGCTTGGGATTTTTTTTTTTTTTGGCCTGATAATGTGATAGAATTGCATGCTTCCTTTCACTGCCATTCCAGACAGAATACGTTCTAGGATATACTACTATAAACACTTATAAAATGGAAGGATTATGAATTATGAAATTATGACATGCTTCCCTAACCGACCGGTTGCTTTCAGACATTTTTGAAAGTAAGTCTGAATTAACTTTAAGTGACACTCATCCTGAAATCTAAAACAGGATTACTGAGATTGCATCTAGCCTGCTGTACTAGCTATTGCTCCTAATTCCAATTTTTCAG
Seq C2 exon
CTGAGGAGAGGAAGACACCCAGTGACTCTAACAGTCCATCTTCATCTTCACTGTCAGCACTCAGTGACTCTGCTAACAGCAAAGAAGATGCAGATATTTCTCCAAAAAACAAGGGTTCAAACAACCTGCTGGTCATTTCTGTAGTGCCTGGTACTCAGACCTCACTGAATACTGAAGAGAAGTCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000016223:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.554
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=FE(42.4=100)
A:
NA
C2:
PF058767=Terminase_GpA=PD(27.3=55.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]