GgaEX0014818 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30663697-30667445:-
Coord C1 exon
chr4:30667279-30667445
Coord A exon
chr4:30664125-30664316
Coord C2 exon
chr4:30663697-30664028
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCCTAATTCCAATTTTTCAGCTG
3' ss Score
7.18
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTGTCACGTGTGTGGGTTTGAGACGGAGATGAATGTCCAGTTTGTCAGTCATATGTCCCTCCACGTGGATAAGGAGCAGTGGATGTTCTCGATTTGCTGCACAGCATGCGATTTTGTCACCATGGAAGAGGCAGATATGAAGGCTCATGTCAACAGCAAGCACACAG
Seq A exon
CTGAGGAGAGGAAGACACCCAGTGACTCTAACAGTCCATCTTCATCTTCACTGTCAGCACTCAGTGACTCTGCTAACAGCAAAGAAGATGCAGATATTTCTCCAAAAAACAAGGGTTCAAACAACCTGCTGGTCATTTCTGTAGTGCCTGGTACTCAGACCTCACTGAATACTGAAGAGAAGTCAGAGAAAG
Seq C2 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAAGTAAGGAAAGCAAGTACACAAACTTTTACTGTGTTAAGCACCTCTATTATTGTGGGGACAGGACAAAAGGAAGTCAATTAGAAAGGGTTAGTAAAATGTCTGAGAATCCAGATTTGGGGCTTCTGTTATTTAGATAATAAAAGCCCAGTCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.070 A=0.554 C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=FE(42.4=100)
A:
PF058767=Terminase_GpA=PD(27.3=55.4)
C2:
NO
Main Skipping Isoform:
ENSGALT00000016223fB14063
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACGTGTGTGGGTTTGA
R:
TCAGGTGGATTTGCAGATGGC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]