RnoEX6060184 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32403505-32410188:-
Coord C1 exon
chr19:32410022-32410188
Coord A exon
chr19:32404001-32404192
Coord C2 exon
chr19:32403505-32403682
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGCGTGTTTTTGTTTTCCAGGGG
3' ss Score
9.88
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTGCCACGTGTGTGGATTTGAGACGGAGCTCAATGTTCAGTTTGTGAGCCACATGTCTCTCCATGTGGACAAGGAGCAGTGGATGTTTTCCATCTGCTGCACGGCCTGTGACTTTGTCACCATGGAGGAAGCAGAGATGAAGAGTCACATTGGCACCAAGCACACAG
Seq A exon
GGGATGATAGGAAGACCCCCAGTGAATCAAACAGCCCCTCCTCATCCTCACTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGTGGGAACAACTTGCTGGTCATCTCTGTGGTACCCGGGAGCCAGCCCTCACTGAACAACGAAGAAAAGCCAGAGAAAG
Seq C2 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-'24-30,'24-28,25-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.708 C2=0.000
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=43.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGTGGATTTGAGACGG
R:
CCGGGTGATGAGGTGGATTTG
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]