Special

MmuEX6036578 @ mm10

Exon Skipping

Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79180045-79186353:+
Coord C1 exon
chr8:79180045-79180211
Coord A exon
chr8:79185598-79185789
Coord C2 exon
chr8:79186176-79186353
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTTTTGTTTCCCAGGGG
3' ss Score
10.23
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTGCCACGTGTGTGGATTTGAGACGGAGCTCAATGTTCAGTTTGTAAGCCACATGTCTCTCCATGTGGACAAGGAACAGTGGATGTTTTCCATCTGCTGCACGGCCTGCGACTTTGTCACCATGGAGGAAGCAGAGATAAAGACTCACATTGGCACCAAGCACACAG
Seq A exon
GGGATGATAGGAAGACCCCCAGTGAATCGAACAGCCCCTCTTCATCCTCCCTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGCGGGAACAACTTGCTGGTCATCTCTGTGGTGCCCGGGAGCCAGCCCTCACTGAACAACGAGGAAAAGCCAGAGAAAG
Seq C2 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'29-38,'29-29,31-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.133 A=0.663 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF139091=zf-H2C2_5=WD(100=44.6)

							
A:
PF139091=zf-H2C2_5=PD(0.1=0.0)

							
C2:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000096214





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000113199, ENSMUSP00000114208, ENSMUSP00000119511, ENSMUSP00000120562, ENSMUSP00000120913
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr4:145765547-145765738 
HIGH PSI
HsaEX6086382
(ZNF827)
Human
(hg19)
chr4:146686699-146686890 
HIGH PSI
HsaEX6086382
(ZNF827)
Rat
(rn6)
chr19:32404001-32404192 
HIGH PSI
RnoEX6060184
(Zfp827)
Cow
(bosTau6)
chr17:12736734-12736925 
HIGH PSI
BtaEX6071350
(ZNF827)
Chicken
(galGal4)
chr4:30664125-30664259 
ALTERNATIVE
GgaEX0014818
(ZNF827)
Chicken
(galGal3)
chr4:32340242-32340433 
ALTERNATIVE
GgaEX0014818
(ZNF827)
Zebrafish
(danRer10)
chr1:35300209-35300406 
HIGH PSI
DreEX6032223
(znf827)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACGTGTGTGGATTTGAGACGG

				
R: 
CCGGGTGATGAGGTGGATTTG

				
Band lengths: 
245-437

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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