MmuEX6036578 @ mm9
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81703944-81710252:+
Coord C1 exon
chr8:81703944-81704110
Coord A exon
chr8:81709497-81709688
Coord C2 exon
chr8:81710075-81710252
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTTTTGTTTCCCAGGGG
3' ss Score
10.23
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTGCCACGTGTGTGGATTTGAGACGGAGCTCAATGTTCAGTTTGTAAGCCACATGTCTCTCCATGTGGACAAGGAACAGTGGATGTTTTCCATCTGCTGCACGGCCTGCGACTTTGTCACCATGGAGGAAGCAGAGATAAAGACTCACATTGGCACCAAGCACACAG
Seq A exon
GGGATGATAGGAAGACCCCCAGTGAATCGAACAGCCCCTCTTCATCCTCCCTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGCGGGAACAACTTGCTGGTCATCTCTGTGGTGCCCGGGAGCCAGCCCTCACTGAACAACGAGGAAAAGCCAGAGAAAG
Seq C2 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'13-18,'13-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.665 C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=FE(52.4=100),PF0009621=zf-C2H2=PD(91.3=37.5),PF047807=DUF629=FE(72.4=100),PF139091=zf-H2C2_5=WD(100=44.6)
A:
PF058767=Terminase_GpA=PD(16.2=26.2),PF047807=DUF629=PD(23.7=27.7),PF139091=zf-H2C2_5=PD(0.1=0.0)
C2:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7),PF139091=zf-H2C2_5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGTGGATTTGAGACGG
R:
CCGGGTGATGAGGTGGATTTG
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: