BtaEX6071350 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12725341-12737470:+
Coord C1 exon
chr17:12725341-12725507
Coord A exon
chr17:12736734-12736925
Coord C2 exon
chr17:12737293-12737470
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTAATTTTTCAGGGG
3' ss Score
11.22
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGTCACGTGTGTGGATTTGAGACGGAGCTCAACGTCCAGTTTGTCAGCCACATGTCGCTCCACGTGGACAAGGAGCAGTGGATGTTCTCCATCTGCTGCACGGCCTGCGACTTCGTCACCATGGAGGAGGCGGAGATAAAGGCACACATCGGCACCAAGCACACAG
Seq A exon
GGGAAGACAGGAAGACCCCCAGTGAATCAAATAGCCCCTCTTCCTCATCCCTCTCAGCTCTGAGTGATTCGGCCAACAGCAAGGACGATTCAGACAGCTCTCAGAAGAACAAGAGTGGCAGTAACCTGCTGGTCATCTCTGTCATGCCTGGGAGCCAGCCCTCCCTGAATAGTGAGGAAAAGCCAGAGAAAG
Seq C2 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGCCATCTGCAGATCCACCTCATCACCCGGATGTTTGAGTGCGACGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAACATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'13-19,'13-17,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.708 C2=0.000
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=43.9)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000016933fB8073
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGTGGATTTGAGACGG
R:
GCACTCAAACATCCGGGTGAT
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]