HsaEX6086382 @ hg38
Exon Skipping
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145764988-145774672:-
Coord C1 exon
chr4:145774506-145774672
Coord A exon
chr4:145765547-145765738
Coord C2 exon
chr4:145764988-145765165
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTTATTTGCTTATTTTTCAGGGG
3' ss Score
8.23
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTGTCACGTGTGTGGATTTGAGACCGAGCTCAATGTCCAGTTTGTCAGCCACATGTCACTCCACGTGGACAAGGAGCAGTGGATGTTTTCGATCTGCTGCACTGCCTGCGACTTCGTCACCATGGAGGAAGCAGAGATAAAGACTCACATTGGCACCAAGCACACAG
Seq A exon
GGGAAGACAGGAAGACCCCCAGCGAATCAAATAGCCCCTCTTCATCCTCCCTCTCAGCTCTGAGTGATTCAGCCAACAGCAAAGATGATTCAGATGGCTCCCAGAAAAACAAGGGCGGGAACAATCTGCTGGTCATCTCTGTCATGCCTGGGAGCCAGCCCTCACTGAACAGTGAGGAAAAGCCAGAGAAAG
Seq C2 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGTCATCTGCAGATACACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-'50-46,'50-43,51-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.725 C2=0.027
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=46.3)
A:
NO
C2:
PF139091=zf-H2C2_5=PU(4.2=4.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCGATCTGCTGCACTGC
R:
GGGGACAGTGTGGCATTTCTT
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains