GgaEX0014818 @ galGal3
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32339968-32343562:-
Coord C1 exon
chr4:32343396-32343562
Coord A exon
chr4:32340242-32340433
Coord C2 exon
chr4:32339968-32340145
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCCTAATTCCAATTTTTCAGCTG
3' ss Score
7.18
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTGTCACGTGTGTGGGTTTGAGACGGAGATGAATGTCCAGTTTGTCAGTCATATGTCCCTCCACGTGGATAAGGAGCAGTGGATGTTCTCGATTTGCTGCACAGCATGCGATTTTGTCACCATGGAAGAGGCAGATATGAAGGCTCATGTCAACAGCAAGCACACAG
Seq A exon
CTGAGGAGAGGAAGACACCCAGTGACTCTAACAGTCCATCTTCATCTTCACTGTCAGCACTCAGTGACTCTGCTAACAGCAAAGAAGATGCAGATATTTCTCCAAAAAACAAGGGTTCAAACAACCTGCTGGTCATTTCTGTAGTGCCTGGTACTCAGACCTCACTGAATACTGAAGAGAAGTCAGAGAAAG
Seq C2 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'12-14,'12-12,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.140 A=0.564 C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=FE(43.1=100),PF139091=zf-H2C2_5=WD(100=43.9)
A:
PF058767=Terminase_GpA=PD(26.9=53.8)
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACGTGTGTGGGTTTGA
R:
TCAGGTGGATTTGCAGATGGC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event