DreEX6032223 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35297579-35304941:-
Coord C1 exon
chr1:35304603-35304941
Coord A exon
chr1:35300209-35300406
Coord C2 exon
chr1:35297579-35297756
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAATCCCACACAGGTC
3' ss Score
9.49
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAGAGAGGAAATACAAGTGTCATTTGTGTCCATATGCAGCTAAGTGCCGAGCCAACCTCAACCAGCACCTCACCATCCACTCAGTCAAACTGGTGAACACAGATGTCGAGCAGATTGTTACCGCTGTTACCAACGATGGCCCAGAGCTCAAAAACTGCCCCTACTACTACAGCTGCCATGTCTGCGGCTTCCAGACAGAGTTCAATGCTCAGTTTGTCAGTCATATGTCTCTTCATGTGGACAAAGAGCAGTGGATGTTTTCTCTCTGCTGTAGCACCTGTGAGTATGTGGGTGTGGACGAGGCCGAGATGAAAGCTCACATCAGTGCAGGGCACGCAG
Seq A exon
GTCTCAATTCTAGAAGCCCTCTCAGTGAGACCAAGAGCACTTCCTCCTCTCTGTCAGCCCTCAGCGACTCCCTCAACAGCTCTGAAGGTGGAGATGTTGCCCAAGGTAACGAAGAACTAAAAAGCCTTTTGGCTCCGCCTTCATCTGTGGGAAGCCAATCAAGCTTAGGCCCAGGAGCAGAGGAAAAAGCAGAGAAAG
Seq C2 exon
GCTTTGAATGCGTCTTCTGCAACTTTGTGTGTAAAACCCGACCCATGTACGAGCGGCACCTACAGATCCACCTGATCACGCGCATGTTTGAGTGTGACGTCTGCCACAAGTTCATGAAGACGCCCGAGCAGCTCCTGGAGCACAAGAAGTGCCACACCGTCCCCGCTGGAGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.433 C2=0.000
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=21.1)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTACTACTACAGCTGCCA
R:
TCAGGTGGATCTGTAGGTGCC
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]