RnoINT0168681 @ rn6
Intron Retention
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32404001-32410188:-
Coord C1 exon
chr19:32410022-32410188
Coord A exon
chr19:32404193-32410021
Coord C2 exon
chr19:32404001-32404192
Length
5829 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GGCGTGTTTTTGTTTTCCAGGGG
3' ss Score
9.88
Exon sequences
Seq C1 exon
TTGCCACGTGTGTGGATTTGAGACGGAGCTCAATGTTCAGTTTGTGAGCCACATGTCTCTCCATGTGGACAAGGAGCAGTGGATGTTTTCCATCTGCTGCACGGCCTGTGACTTTGTCACCATGGAGGAAGCAGAGATGAAGAGTCACATTGGCACCAAGCACACAG
Seq A exon
GTAACCGTCCTGTCCTTTCCCATTGCCTGCACCCCACAGTGGCATGCATGCACTTGGGCATGATCATGGCTACCTAGACCTTGCTGCAGAGCGTAGATACTGCTGGACACGGCGAGCTGCACACGTGCTCCTCACCTGGTCCTAGCTGCCGTCACCACACTTAATAGTCACTAAGCTCTCCTGCCCCAGGCTTGTGCTTTGCCCGCTCTTCTCAGCTAGCAGTAACCCCTAATGTGATCACAAGGCAGCGAGAAGCGGAGAGATGGGTGTTCCACTGTCAGTGAATAGGATGTGGATTCAGACCCTCCACCCAGAACCGGTCTTGCTCTACCTCCTGCTGTCTCTCTCCGTGCTGTTCTGACAGGCCTGCAGGACACTTGGTATGGCCTTGGCCCTTTCTGTTTTGCTGTACCAGGGCACTGTCCCCCTAATTCTGAAGGTTCTTGGGCGCTCCACAATGACACACATGGTATGTCTGGTCAGACTACCCTCTTCTCCTGAAACTTGAGGTTTGGCAAGTGCCTGCCTTTCATTTAAAGCCTCTTGCTGCTCTGGTTCACTTCTTCCATTTAATAATGATAACACTTTGACTTCTCCAGTAATTACACCCTCAGAAGGGATGGTAGGAGTGACACCAGCATAGAGTCATTAAGGGACACTGTGAGTGACTGCCCTTCCTCTCTCCCATTTGTGGTGCTTACAAACTAAGAGCTCATGTTGCTTACTGCCAGTCCTGGGCATGGGGTCAGCCCAGACATCGCTGGCTCTGGAAGGCTCCAGGAAGGGGACTCATTGACAGCCGTGCTGATAATGTGCATGGCCAAGAAGGAGCCCTGCTTCTCTGACCACTGTGGCTCGCTGGTGCCAGCAGCAATAAAAGTTCGCTTTTGTCAGTAAGTTGAGCAGCTATGACTTGGAGGTCCACAGAGAGTCATTATGCAGAGTGAGAAGGTGCCATTTTTACAGTCGGTTGTCTGACTGTAACCACATCAGCACTGTGGGAAGTAGGTGAGCTGGGAGGCCCATGTGGAAGACAAATTAAATTCGGTATTTCTGGAATGGCTAATGGAAGGAAGGGCCAGCCTCTCTCCGGTTCCCACGTGGCTTTGCTGTACTCTTTCTTTTGTCCTGTCTGTTAAACACTGACTCATGAAACCTCCTTCACCCCAGTGTGTCCCTGAATGTCTCTCCACCACCCCCACAGTCCTCCCCACCCCTCACAGTAGCTTGGCCTCACCTGTCCTCGATGGAAACTTCACGTTTGCAATTAAGCAAAGCAGACACACCTCCTAAGTACCACCGGATGCACAAGGTAGACCGTGTTCCCTCTGAGCTGACAGAGCTCCCAGACTAGCTGGGCAGGCAGAAGCCACAAGTGACACACTTAAAGAAGTTTCCATCTGATATAATAGAGGCATCTCAGCCAGCAGCTGCTGTTGGAAAGATAATGTTGTTTTTAAGTCTCGCTGCTGTGGGCCAGAGTTTCCATACATCCAGGTGATAAATGCTTCAGGCCTTGCGATTTCTGTTCTTCTTATTATGCTTAATGAATTCTTAGAGAACTTTATACAGTGTGATTTGAACATATTCACCCTGCCAAATCCTTCCAGATCTACCTTCTGCCTTCCCTACCCACCTACCTCGGTGTCAGGACACAGCTTTGACACAGCTCGGCCATCCACTGAACTGACAGTCCTGGGCACTGGACAGGCAAACAGTCATGTTTCAGTAAAACTGACTGACAAAAGCAGGAAGCTAGCAGGAGTCCATGGGCTATCATTTGCTGACCCCTGTTAGAAGTTAGTAGTTTGACCCTGAGAGGTTCCTGTGTGCTACTGCTTTTAGAGGTCTGACTTTGGCTGCAGTTCTCCTAACCTAAATCTGTGCACTAATAAGTTCAGTTACTACGAAGGTGTTTAAGCCTATCTCCATGCTTCATACTGACGCAGTCCAGCATCTAGCCTCGTGAGCATATTACTCCCCAGCAGAAGCCCACAATGGCTTCCCCTCCTAGCCTTTACGGTGGTTTGGGGGACTTCCTCTCACAGATGGGCTCTAAACATTTATTGGTAAGCACCAATGCTTGGATTATTTCATAACATCTTCCAAAGACGTGACTTTCCCTTGTGCTCACTCACGGTTTCCAGCACCACCTGACGCGCTGGCTCCTGCTGGCATCGGCCACTCTTTTCCTCATATCCAGACTTCTTTACTTTGTCTTAGGTTCAAGTCTGGAGGTGATGGTTTCCTCCATCACGTTCAGTGTCAGCTTTGCTTGTTTATCCTTCCTTTTTATGGTGTCTTTTCACCAGGTCTGAAATCTGACAGTCTTCCATTTCTTTGAAGATATTGATGGTGTCTTTCCTACGGCTCATTCCTGTGGGAAGCCTCTGTTTATGGATGCTCCTGGGAATTTTCTCTTTTCTCTTTTCCTTCTTTCTTCTATTTCACTTTATTTTAGAGAGTAAACCACTGTGGTGGTCAAGCTCCGTCTCTCTGTCCTCCTGAGTTCTGGGATATAACCATGACATCACACTAGGCTCTACATTTTGGGGGGTTTGTTTTGTTTCTTTCTTTGCCTGTTTTAAGCAATTTAATGATGATGTCCCTGTGTCTCTTGACATGGGTGTCTTCTTTTTAGACAGGGTCTCACTATCTAGCCCAAAGTGACACTGAGTTCACAGTCCTGCCTCTGTTTCTGAGTGGTGGGGTGATGGCTATTCATTCTTCACTCTCCATGTTTCTTGGGCTTGACATTCACTGAGTGTCTCAGATTCTGGGTTTTATGGTATCCCACAAATTAGAAACATCTTGATTATCTAAAAAATACTGCCAGCCAGGTGGTGATGCAGCACTAGGGAGGCAGAGGGAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGCAAGTCCCAGAATAGCCAGAGCTACACTGAGAAACTGTATATTGAAAAACGAAGAGGAAAATATTGTTAATAGCTAGGCCTGGTGGCAATGCCTTATCTTAGTACTCTGGATGCAGAAGCAGGCAGAGCTCTGTTCAAGACAAGCCTGAGGTACAGAATGAGTCCAAAACAGGCAGGCAGGGTCACATACACAGACCCTGTCTCAAGGAAACCAGCAAAGGAAGTTACGCCTTGGCCAACTAATCAGGACCTCAAGTCAGTCTCATATAAAGCTGCCTGGACGAAGTTTAGAACAGAAGCAGAAGGAACACCCATTCAGAGCCTGCCCTACATGTGGCCCATACATATACAGCCCTCAAACTAGATAAGATGGATGAAGCAAAGAAGCGCAGGCCACAGGAACCGGATGTAGATCTCTCCCGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAACGGGACCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCTCATATGAACAACAATTCCAACCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGTCCCTGGACTCTGACCTCATAGGTAGCAATGAATAGCCTAGTAAGGGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGACTGAACCTGCAGTGAACGTGATTGTTGGGGGAGGGTGGTAATGGGGGGAGGATGGGGAGGGGAACACCCGTAGAGAAGGGGAGGGGAAGTGGAAGGGGGATGTTGGCCCGGAAACTGGGAAAGGGAATAACAATCAAAATGTAAATAAGAAATACTCAAGTTAATAAAGATAAAAAAATTAAAAAAAAAATAAAGCTGCCTAGAGCACCTCACCGGAGCAGCTCTCAGCTCACAGAGGCTCTTTGACGGTTCTCTGTTCTGCTCTATTCCAGACCTTTCCTGTAGCTTTTACTTGAGGTTTATTCATGATCTTAGTTATGGTTTCTGTTGCTGCAACAAAAAATACCATGACCATAAAGCATGTTGGGGAAGAAGGAATTTATTTGGCTTACACTTCCACATCACTGTTCATCATAGAAGGAAGTCACGACAGGAACTCAAGCAGGGCAGGAACCTGGAGGCAGGAGCTGAGGCAGTAAGCAGGGTGCTTGTTCCTGGTGGCTTGCTCAACCTGCTTTCTTATAGCACCCAGGAACCACCAGCCCAGGGACGGCCCCACCCATAATGGCCTGGACCCTCCCCCATCAATCACGAATTATGAAAATGCCCTTCAGGCTTGCCTGCAGCCCGACTTCATAGACACATTTTCTTAGTTGAAGTTCCCTCCTCTCAGATGACTTTACCTTGTGTCAATTGACATGAAACCATCCAGAACTTTCTGCTTTGTAACCCTCTCGTGAGGGCCTCATTGTGTGTTTCCATCTGTAGACTTGTAATTTAGATCCCTCTCCATATCTTCCATGTGTTTGCCTAACTTTTTGGACATCTGAATTATAATTGCAACGTTCTCTACTACTAACTATAAAACTCTGCCTGTTCTGGGTTGGCTTTGATTGGTTGATTCTCCGCCCTGCTTTGAGCTGGTTTTTCTTGTTTCTTTGCATATCTGATAATCTTTGTGTTGTTACTATGCTGGCTGTTCAATTATGTATCTTTTCTTCCTGTTAGTATTGGTGACCTTTATTTAGGACATAGGACTTGGAAGCCTTGACATTTCGGCATCTCCTATGATTTGGTAGGCAGTTGTGGATTGCTAGGTATTTATCTATTGCTCCCTTTTCAAAGTCCTTTCTCAGTGTCCTACCTAATGCCTATGGATGGTATGTTGTTCTGACCTTGCTGTTGGGAACAGCACTGACACCAGACCTCTGCAGTGCCAGCCCTGTGGGACTGGCCTCAGTGTTCTCAGGTAGCCTTTCCCCCTCCGGGCGTGAGTAGCTGCTCACACCCTGCTCTGACCCATGTCCTCCTGACCTCTGCAGGACTGGGTATTGTTCTCTGTGTACCTGTCCTTCATTGGCCCTGTGTTCTGCAGTGTCTGTCCATTGTGACCTCCGCAGACCCTTGGCTGCTTCTCTTCCTGAGGAGAGTACATCAGGCTCTTCTTATGTCCCTTTTCCTGTCCTGCTTCCTAAGACATATCTTAGCATAGAGCTACACCATTGGGGGGGCCCTCCTTTGTCCTGTCTCTCAGAGACCAGTGTCTTCATTGCCTCATGTCCAGTGTTGTAAAACTGTTGTTTTGATACATTCTGGTTCGGTAGCTGTCACAGTGTCAATATTAGATCTAATCCCTGATACCCGGGGCTTTCGTAGATGCTAAAGTCTCATGACACTAGGTTGAATGACTTGTTAACTTCTTTATGCCTGGCTCTGAAGGAGAGTCCAGTGTCTGCTTATGAGCAGACTCAACTGAGACTTGGTTCAAAGGTTACACCATCTGGGCCAAGTTTGCCCCTCTGTGGAGTAGGAATGACAATAGTGCCTGTGAGGTGTGTTTGTTGTACACACACCGTGGACTGAACCCAGACCCCCACACATGCTAAGTCCCTCGGATCCTGACCTACAGCCTCAGACCTAAGACGTCTGGGAGAACAACTATGAGACGCGCATCTAAAGCATTGCACAGACCCTGGATGGGGCTCAGGGACGAGTGTGATCTGCCCAAGACCTTAATAAAGGTTCACAGAGATCTGAGCTCAACATGCCACACATGCCCTCCCCAGGGCTACACTAGAGTCAGCTTCCCAGCATGTTTGGGGTGTGTGTGTGCAGGAAGTGCTAAAGCTCCAGGTGCTGCTGGCAGCCTTCCTCACCTGCCATCATTCTAGGGGCTCTCCCCAGATAACAGACCTGGCGTGTTTTTGTTTTCCAG
Seq C2 exon
GGGATGATAGGAAGACCCCCAGTGAATCAAACAGCCCCTCCTCATCCTCACTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGTGGGAACAACTTGCTGGTCATCTCTGTGGTACCCGGGAGCCAGCCCTCACTGAACAACGAAGAAAAGCCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697:ENSRNOT00000015929:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.708
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=43.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]