GgaINT0076314 @ galGal3
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32340242-32343562:-
Coord C1 exon
chr4:32343396-32343562
Coord A exon
chr4:32340434-32343395
Coord C2 exon
chr4:32340242-32340433
Length
2962 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TCCTAATTCCAATTTTTCAGCTG
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTGTCACGTGTGTGGGTTTGAGACGGAGATGAATGTCCAGTTTGTCAGTCATATGTCCCTCCACGTGGATAAGGAGCAGTGGATGTTCTCGATTTGCTGCACAGCATGCGATTTTGTCACCATGGAAGAGGCAGATATGAAGGCTCATGTCAACAGCAAGCACACAG
Seq A exon
GTGATGATCCCCATCTCCCAGCTGCAGTGATCTCTCTCTTCCCTGCTTTTTAGGTGCAACCTTCACACTTCTCATAAGCACTCTCTTTACTTTCACTGAAACGCTTGCTAATTAAGGCCTGATCTCTCAAAGCTGAAGTGAAGCCAGGCAAATAGTCTGCTAGTACAGATCAGTTTTCAAGCGCAGAGGACAAATGAAGGGCTACTTCACCTTCCTTCCCCATGTCCCTCAAGTCTCCTCCCTTGCTGAAGTTAACATACATTGTTTGTTTTTCTGACTGATTTACTGTTTCATCAGAATCCTGATTTGCCCTCAGTAATGATAAGGCAACTGTGAGCGCTATCTGTGCATATCTGGCTTTAAGGTTATAACACGCAATATACTGAGCTTTGCTCTTGGTGTGTTCGGAGTTTCCTGTTGATGTTTCTTTGATGCTGTGACTCAGAAATACTTTAAATGTCACTTTATATTCAGTATCAGAACAAGTCCTGTGTCTTCTCCCTGGTCCTGTTCTTAGTCAAGTAATAGCCAAAGATAAGAACAGAAGTTTTCGAACAAGCTCCATATGCTTAGTCTAACTAGTGAACCCTGGCATAATTTAAGGAGAAGAAAATTAGAATGCTTTCAGTTGATTTCTTTTATAACACCAAGCAGAAGAATTTTGCTGTCACAAACTACTAATAATTGCATTGACAGTTCTGAAGCTGAACTGCATCCAGAACAATTTTCCCATTATTAAATTGCTCTCTGTGTCTTACCAAGGGTAAAACTGGGAAGATAGGATGGGTGAAAAGAGAGGGGAATGTTTGTGCTTACAACTGTATAAGTAAGTTAAATTATTGGAATGCCCTCACAGATTTTTGTGCCAGTGTAGCTTTCAGCACTCCAACTCTGCTCCCATCTCCCTGCACTCACACTGTCTTTACCCCATTCTTTCATCCATCTCCACATGTAGATGGAGAAATGCCATCTGTAGCCATGTGAAAAGTTTGCATCAGAGCTCAAAAAAGAGCTGTACTTGAGTGTATCTTCCTGTTACGGCTAAAATATTGGAGATGCTGCTTGTCTTTTAAAGCTTATCTTTTAATTATCTGTTCTTCATTCACTCTGTCAAATTGAGCCATTCAGCAGGAGATCCCACCAAATGCTTACACGTATGGCAGGTACTGGGGGAAAAAGACACAATAGGTTTTCTGGGTCACTTGCCTCCAGTCCCTAGCCTGTAAGGTTACTGAGCAATAAAAGGCCTGTTTGTAAGGCTCTTGGCATATGTCTTCAGGCAAGTAGAATTGTTTTGGACCAGCTATCCCCACAGACAGATAGCTGCAGATTTTCTGGTATTAAAGATGAGGTACCTTTTTAAAATTCCCAGCACGCATCTTATTAATAATCAGGACTCACACACATTCTTTTCTGCCAGAACTGCCTTCAGTCTGAAACATCAGCCCACCTCCCTCCACCTTTTTTCTCCCCTCCCACAGTATTTATTCCCTCCCTGTATTTCTGGAGAACAACCCTCTCCCATCTAAACGTTCATTGAGCCTTTTCTTACGTGAAATACTCTTCTCAAAGTACCGATCCTTCACTGTGTGCGTTCTTGTTAGATTCCCATTCTTGGCATACACAACTATAGCTGTATGTGGTATATTTAGTTGGAATTAGTGGTGGTGGCAAAGTAAAACAGCAGAAGCTACTGGGAATAACTCACACAGTAATATTCTGTGATCATATTTACCTCCCTTGGAGACTTTAACATGCTGATAGCTCATATTCATCCTGTGTTCTGCTCAACTTCTTTTTTTATTTTGTTTTCCTTGACTGTTTCCAACTTAAGCACTCCTCATTTGTAGCAAAAAATTCTTGTTACTGGCCCTCCAGGTCATAACCTTGTAGTCTGTACTATTAAATTTCATTCCATTTTTATTACTCCAGTCCCCAAGGTCAGTGAGTCTTTCTGTATGATATCCCAGTCATCCTTCCTATTGACAGCATGGGTCATCAGATTTCATTAGCACGTTCCTACATTTTTTTTCTAGACTTAAAGGTGCCACTCATGAGTTTTTAGCTAGGTACATAGTGCTGATTGCAGAGGCCTCAGTCGGAGGACTTACTTTATCACATAGATAATATGACATTTTAGTGAAGTCTGTTTTTAACAGAGCTCTGAATAAAGCGTGACATAGATGGGAAGAAATAATTTGCCCATCCTGATTCTTTGGCTCACAGCAGAAAATACCAGACTAGGCTTATATGAGAACTCTCACTCTTGCTCATTTCTAGTGTGTGATACCATTTGGGATTCAGACTTCATACATTTATTGCACACATAAGGCAACGCTGGAGTGCTACAGCTTTAGATCCAGTTAAATATGTTTTGTTGTTTTTTTCACTTAATATTCAATGAGAGTTCCTAGCAACAACAGATACATCTCAAGACCACACAGTCATTATTGAGGCTGCATCCTCAGTACGCTGAGTGTGATTTTTCTCCTTTACCCTTCCTCTCAGAGCTATTCAGTGGACAGATATAAGCAGAAAGGTGGTGGAAGTTTAGTTTGGAACGCTAATAAACTATGCCATCAGCAGCACCCCAACCTCCACTTGTGAGAACTTCACTTTCTTTCTCAGTGACAAGTTCTTGATTGTCTGAGCTAATCAACGTGTGTGCTTGGGATTTTTTTTTTTTTTGGCCTGATAATGTGATAGAATTGCATGCTTCCTTTCACTGCCATTCCAGACAGAATACGTTCTAGGATATACTACTATAAACACTTATAAAATGGAAGGATTATGAATTATGAAATTATGACATGCTTCCCTAACCGACCGGTTGCTTTCAGACATTTTTGAAAGTAAGTCTGAATTAACTTTAAGTGACACTCATCCTGAAATCTAAAACAGGATTACTGAGATTGCATCTAGCCTGCTGTACTAGCTATTGCTCCTAATTCCAATTTTTCAG
Seq C2 exon
CTGAGGAGAGGAAGACACCCAGTGACTCTAACAGTCCATCTTCATCTTCACTGTCAGCACTCAGTGACTCTGCTAACAGCAAAGAAGATGCAGATATTTCTCCAAAAAACAAGGGTTCAAACAACCTGCTGGTCATTTCTGTAGTGCCTGGTACTCAGACCTCACTGAATACTGAAGAGAAGTCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000032243:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.564
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=FE(43.1=100),PF139091=zf-H2C2_5=WD(100=43.9)
A:
NA
C2:
PF058767=Terminase_GpA=PD(26.9=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]