GgaEX0028560 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30656085-30664028:-
Coord C1 exon
chr4:30663851-30664028
Coord A exon
chr4:30662391-30662537
Coord C2 exon
chr4:30656085-30661050
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTTTTTTTTTTAAGGCA
3' ss Score
8.66
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
Seq A exon
GCATCCAGAAGAGCCTGAAGAGATCTAAGTAAATTGTATTTTTCTGTTTCCTGTTTGCTGTGGGGGAAGAGAAAAAAAAAACATGATTCCTCCAGTTCCAGATCAAAATCTGAGATTCTGATCCAGAGAGCACCCAGCTCAGGAGAG
Seq C2 exon
GTGCCCATTCTGCATCTACTCCACTAACCGCCCTGCAGCAATGGAGTGCCACCTGAAGACTCACTACAAGATGGAGTACAAATGTCGGATCTGCCAGACAGTGAAAGCAAATCAGCTGGAGCTGGAGATGCACATCCGAGAACACCGCCTTGGCAACCATTACAAGTGTGACCAGTGTGGCTACCTGTCCAAGACCGCCAACAAGCTGATAGAACACGTGCGTGTCCACACTGGTGAGCGCCCTTTTCACTGTGACCAGTGCAGCTACAGCTGCAAACGCAAAGACAATCTCAACTTGCACAAGAAACTGAAGCATGCTCCACGCCAGACTTTCAGCTGCGACGAGTGCCTGTTCAAGACTACCCACCCTTTTGTTTTCAGCCGCCACGTGAAGAAGCACCAGAATGGGGACTGTTCTGAAGAGGAGAAGAAGGGCCAGTATTCAGCCTCTAAGGAAGCCAGTCCGCTCCTACCAGTGAACAGCTCCAGAAACCTCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTGATCACACGGATGT
R:
GATGTGCATCTCCAGCTCCAG
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]