MmuEX6036577 @ mm9
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81709497-81712080:+
Coord C1 exon
chr8:81709497-81709688
Coord A exon
chr8:81710075-81710252
Coord C2 exon
chr8:81712048-81712080
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCCAGCTTCGGTCCTTTCAGGGT
3' ss Score
7.55
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGATGATAGGAAGACCCCCAGTGAATCGAACAGCCCCTCTTCATCCTCCCTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGCGGGAACAACTTGCTGGTCATCTCTGTGGTGCCCGGGAGCCAGCCCTCACTGAACAACGAGGAAAAGCCAGAGAAAG
Seq A exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq C2 exon
CTCAGGACAGTGGTGAGTGTCAGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'15-19,'15-18,16-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.665 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=PD(16.2=26.2),PF047807=DUF629=PD(23.7=27.7),PF139091=zf-H2C2_5=PD(0.1=0.0)
A:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7),PF139091=zf-H2C2_5=PU(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGATAGGAAGACCCCCA
R:
AGTCTGACACTCACCACTGTCC
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: