RnoEX0101727 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32401661-32404192:-
Coord C1 exon
chr19:32404001-32404192
Coord A exon
chr19:32403505-32403682
Coord C2 exon
chr19:32401661-32401676
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCCAGCTTCGGTCCTTTCAGGGT
3' ss Score
7.55
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGATGATAGGAAGACCCCCAGTGAATCAAACAGCCCCTCCTCATCCTCACTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGTGGGAACAACTTGCTGGTCATCTCTGTGGTACCCGGGAGCCAGCCCTCACTGAACAACGAAGAAAAGCCAGAGAAAG
Seq A exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq C2 exon
CTCAGGACAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]