DreEX6032224 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35290469-35300406:-
Coord C1 exon
chr1:35300209-35300406
Coord A exon
chr1:35297579-35297756
Coord C2 exon
chr1:35290469-35290519
Length
178 bp
Sequences
Splice sites
3' ss Seq
ATCCTGACCTAATCTCCCAGGCT
3' ss Score
6.11
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCTCAATTCTAGAAGCCCTCTCAGTGAGACCAAGAGCACTTCCTCCTCTCTGTCAGCCCTCAGCGACTCCCTCAACAGCTCTGAAGGTGGAGATGTTGCCCAAGGTAACGAAGAACTAAAAAGCCTTTTGGCTCCGCCTTCATCTGTGGGAAGCCAATCAAGCTTAGGCCCAGGAGCAGAGGAAAAAGCAGAGAAAG
Seq A exon
GCTTTGAATGCGTCTTCTGCAACTTTGTGTGTAAAACCCGACCCATGTACGAGCGGCACCTACAGATCCACCTGATCACGCGCATGTTTGAGTGTGACGTCTGCCACAAGTTCATGAAGACGCCCGAGCAGCTCCTGGAGCACAAGAAGTGCCACACCGTCCCCGCTGGAGGGCTCAA
Seq C2 exon
GGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGGTGCTATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-'14-17,'14-16,15-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=43.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAATTCTAGAAGCCCTCTCA
R:
TAGCACCTTTCATCTGCTCAGG
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]