BtaEX6071349 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12736734-12739481:+
Coord C1 exon
chr17:12736734-12736925
Coord A exon
chr17:12737293-12737470
Coord C2 exon
chr17:12739466-12739481
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCCAGCCTCGGTCCTTGCAGGGT
3' ss Score
7.32
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGAAGACAGGAAGACCCCCAGTGAATCAAATAGCCCCTCTTCCTCATCCCTCTCAGCTCTGAGTGATTCGGCCAACAGCAAGGACGATTCAGACAGCTCTCAGAAGAACAAGAGTGGCAGTAACCTGCTGGTCATCTCTGTCATGCCTGGGAGCCAGCCCTCCCTGAATAGTGAGGAAAAGCCAGAGAAAG
Seq A exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGCCATCTGCAGATCCACCTCATCACCCGGATGTTTGAGTGCGACGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAACATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq C2 exon
CTCAGGACAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'15-22,'15-19,16-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]