GgaINT0076316 @ galGal3
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32336488-32340145:-
Coord C1 exon
chr4:32339968-32340145
Coord A exon
chr4:32337100-32339967
Coord C2 exon
chr4:32336488-32337099
Length
2868 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTCTCTTTTCTCTGTGCCAGGTG
3' ss Score
11.93
Exon sequences
Seq C1 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
Seq A exon
GTAAGGAAAGCAAGTACACAAACTTTTACTGTGTTAAGCACCTCTATTATTGTGGGGACAGGACAAAAGGAAGTCAATTAGAAAGGGTTAGTAAAATGTCTGAGAATCCAGATTTGGGGCTTCTGTTATTTAGATAATAAAAGCCCAGTCCTTCAGAGTTGCCTTAACAGGGGTTTGCACCATTATAGTAAATAGTAATATATGTAGTTTCCCCTAGTTGTAGATCTTAACAAAGTGTGGCCTTTCCCATTTCAAGTCAAAGAGGAGAAAGAAGGTGATGGGTCCTAAGAGAATGAGGCAGTACAGCACGGAGGTGCGGTCCAACTAAGAGGCATTTTGAAGGCATTAGAGCAAAGGAGAGCATGCACCACATTCTCTGTTCTGCACCTAGCTCAAAGAATCTAAATCCTGTCCAATCTGTGCAACTAAGAATGGAGTTGGCTTCTCAAAATCAGACCTCTCAGTTGCTTTGTAATCCTTGTAGATTCTAATGCAAAGTCAGCCCTCCTCAGCAACTAACTATTTTGATCCTTTACTGCCTTTCTTTGCATGCTTGGAATAATCACTATAAATTAATGTGTAGCAAGCAGTATACTCTTTTAAGAAAAAAAAAGTCTGTCTTTGGCTAAGGTGCTGTCCTTCAAGATCTGTTCGTAGAGCAATGTCAAAGTTGGACCCCTGAGGAGAGGGGTGATTGGTGGGGCCATGTGCTTGCTCCCTGTGTGCAGGCAATGTGGTGGTATGCAAGATGTATGCCCTGGTCTCCATTTGTTCCAGCTGCTGCAGGAAAAGAGGCTGGAGCCACTTCAAGCCCAGCACAGGCCTCCCTGCTTGCATTGCTCTTGCTAATGAAACTAATGTTTTCAGTGCACTGTAACTGTCAAGTAACTAGCGCAACCACATCTAACGTTACCATGAGTAGCTCTATCAGTTTGCACTGAGGTTTGTGAAAACTGGTTCTATTTGCTAGGCAGTGTCTTGTTCTGCAGCTCTGTAGTTTCCCAAATTTGAATCTGTGATCAATTGAGATACGATGACTGAATCTGGGAATAAGACCAGGCTAGGAAACAAGCAGTGTGCCAGAACGATGGGATGTCTGTTTTGGATGCACAGGCCAGTGATCTCATGCACTCTGGGTTTAAGCTGCACAGAATCTATTCTATTTACTGAGGAAAAATCATGACCTATGACTCAGACCTTCCCGACAGAATGGGCTTCTCAGTCTACATAAGTTATTCCTGCCCGACTCAAGTAATAATTAGGTACCTTCAAAGCTGCATCTAAGAAAAAGCTCTGATTTTTTTTTTTTTAAGGCATCCAGAAGAGCCTGAAGAGATCTAAGTAAATTGTATTTTTCTGTTTCCTGTTTGCTGTGGGGGAAGAGAAAAAAAAAACATGATTCCTCCAGTTCCAGATCAAAATCTGAGATTCTGATCCAGAGAGCACCCAGCTCAGGAGAGGTATGTGCGCATAGACGGCTGAGTTCTCTGTTGCAGTAGAGCTAACCACTTTAGCAGCCTCAGTGCCAGGTTCCCTCTCTGGATCAGAGTACTTGGTGCTGCATCAGGAAAAGTGTCTGGATATTTTACTTCTGTTTGTTTGTCCTTCTCTGTTATTTGCTGCACTCACTCAAAGATCTCTCCATCAGTAGCAAGATAAAATTGAACCTGCAAGTGCAATCAGTTGTAGTGAGTGAAAACAAAGTGAGAGGATATCAGCTTAGAAATTACCTTAAATGACAGAGCATAATTGGCAGAGCGGCTAAACGGTGAATGCAGATCAGCTGGCAAGGGAGACATCTGTAAGACAGTAGCCTGGTGAATTAGTTGTGCCTTTTTACCTAGACTTGCTCTTCTAGCTCACAAGCTAGATCTGGAAGCCAGTACGCTTTGTTTAACACAGCAGATATTCTGGGTGGGTAGCTGTCTTCACCAACTTCCTCCAAGCCACATCAAGTAGAATCTGGGGCATTTTAGTCTTGATTGTGTCCAGGCTTAGTCAGCTCAGCCTTCTTTCCCAGCTTCCAAGGCTCCCTCCTCCAGCCCTCTCAGCCCTTCCTGGTCCAGGAACCAGGGGTGAGGCCCTTTACCATGTTCAACCTGGTCCGGAAGCTTTCTGCTGTGAGTAAGCAGAGCCCACATCCTGTTCCCACATTGGAACAATTCCTGCCGTGGCAGAGGCAGCTGTAGGCAAGCATTGCCGAGCACAGACTAGCTCATCTCCCAGCAATGGGAATCCCTACAAATCATCTTAATAAGCCAACTTTCAGCTGTTTCTAGCCGGATACCCAGCAAGCTTATTGTTCAAAGTCACATAAAAGGAATTTCCTAAGCTTTTGCTGTACATACGGTATTACAAGTTTATTCCATCTTTACTTAAACAGCTGCTTTCATACTCATCTGTAAAAAGTCTCTTTAAACCACTTCTGAATGGAGAAAATGGCATAAAAGGGGTTGTGCAAACACTAGGAATGTCGTTACCNNNNNNNNNNTTCTGAATGGAGAAAATGGCAAAAGTGACTTTGTGCAAACACTAGGAATGTCGTTACCCAAAGTACCTGTGAATCAGTCACCCACTGCACAACCTGGCCTGCTTTGCAGAACCTGCCCCACAAAGGTAAGCCAGAAGATTAAGGGGATGCTCCTTTGGTGCCTTCCTAGGAATGAGCGAGCTCTACTGCCATTAAGTGGGCAAACATACTCTAAGTAGAGACAGATGTCAAGATGAACCAAACATAATAAAGAGACCAAACAGGGAGGACTAAGTGCCTTTTTTCCTGCTTTAGTAGGGCAGAGATGGGCTGAATGAGAGGGTTAACCTGGGAACGCAGAACTTCAAGCCACGTGACTTCTCTTTTCTCTGTGCCAG
Seq C2 exon
GTGCCCATTCTGCATCTACTCCACTAACCGCCCTGCAGCAATGGAGTGCCACCTGAAGACTCACTACAAGATGGAGTACAAATGTCGGATCTGCCAGACAGTGAAAGCAAATCAGCTGGAGCTGGAGATGCACATCCGAGAACACCGCCTTGGCAACCATTACAAGTGTGACCAGTGTGGCTACCTGTCCAAGACCGCCAACAAGCTGATAGAACACGTGCGTGTCCACACTGGTGAGCGCCCTTTTCACTGTGACCAGTGCAGCTACAGCTGCAAACGCAAAGACAATCTCAACTTGCACAAGAAACTGAAGCATGCTCCACGCCAGACTTTCAGCTGCGACGAGTGCCTGTTCAAGACTACCCACCCTTTTGTTTTCAGCCGCCACGTGAAGAAGCACCAGAATGGGGACTGTTCTGAAGAGGAGAAGAAGGGCCAGTATTCAGCCTCTAAGGAAGCCAGTCCGCTCCTACCAGTGAACAGCTCCAGAAACCTCTTGTCACCCCTCTCAGTTATGTCTGCCTCCCAGGCTCTGCAAACAGTGGCTATGTCAGCTGCACACAGCAGTGGGGCAGAACCAAACTTGGCAGTGAAAGCCTTGGCCATCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000032243:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]