DreINT0181675 @ danRer10
Intron Retention
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35285840-35290519:-
Coord C1 exon
chr1:35290469-35290519
Coord A exon
chr1:35290123-35290468
Coord C2 exon
chr1:35285840-35290122
Length
346 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CCTCCTGTCTCTTTGACCAGGTG
3' ss Score
10.95
Exon sequences
Seq C1 exon
GGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGGTGCTATTTAAAT
Seq A exon
GTAAGTGCCACTCATTTATTCATTTACCTTCATCTGATTCCCGTTCCAACCTGTCCGCAACCACACAGCCATATGCACACACGCACGCACGCACACACACACACACACACACACAAACCCTCTCACATGTAGCAGTGTACACACAGACTGTAGCTTACTGTATATACTGTACATCACAGAGGGTAAGACACACCTAATGCCTCCTTCATCCCTTCCCTTTGTCCATTGTGTGTGTTCTTCATTTCATTAAAGACAACAGAGTGTGTTTTGTCAATCGGGGGGTGCATAATTAAATGTCTCCCCCATTTTGTGCCCTACACCCTGCTCCTCCTGTCTCTTTGACCAG
Seq C2 exon
GTGCCCTCTCTGCATCTACTCCACCAACAGGCCAGCCGCCATGGAGGGCCACCTGAAGACACACTACAAGATGGAGTATCGCTGCCGCATCTGCCAAGCTGTGTGGGCCAATCAGGCAGAGCTGGAAAGGCACACGCGCGCTCACCGCCTGGGCAACCACTATAAGTGTGAGCAGTGCGGCTACCTCTCCAAAACAGCCAACAAGCTCATCGAGCATGTGCGCGTGCACACCGGCGAGCGGCCTTTCCACTGCGACCGCTGCAGCTACAGCTGCAAACGCAAGGACAATCTCAACCTCCACAAGCGGCTCAAGCACGCACCGAGACAGACCTTCGGTTGCGCCCAGTGCCCATTCACCACCACTCATCCGTTCGTCTACAGCCGCCATGTCAAAAAGCACCAAGGCGGGGAGGGAAGCGCCGAGGAAGGCGAGGCTCGGCCAGGTACGCCCCATCCGGGCCTTCTGGAGCGAGGTGGGAGCAGCAGCGGGAGCGGGGACAGTGGGAGCACCAGTCCGCTCATGAACCTGTCGGCCTCTCAAGCCTTGCAGTCCGTCGCCCTGTCAATCACCAGCAAGCAGCAAGATGGCACGCCAACCGCGCGCTACCTCTCAGCCAATGGCACGTTGTCCACACTGGCGGCTCGCTACTTTGACCAGTACAGGAACTGTGACCTGGCTCACCTCGTCCCCCTCACCACGCTCTTTACCACCCGACGCTTCACATTCCACAGCCCCTCGCCCTCAAACCCTTCGCCGCCCTTCTCTGCATTCTGGTCCAACTCATCCCCGCAGTCACCACCCTCTCCCACATCACTCAAACACTCCTTCCTGGCATATCTGGGACTGACAGAGAGAGCGAAGACCATTTGACCCTCCTCCCTCCCTCTTCTTCTCCATCACCCTCGGCATCATTCACAGATGCTATTAACTGTTCCACAGGCAGGCTGAAACGCTGCCCGACAAAATAGTAATGCTAGTAAAACATCCATTGATCAGAGGAAAAGCTATTCGCCATTTCATTTTCTGTTCTATCGCAATCCAATCGTTGCTCTTTTTTAAGAGGTCTTATAACAGTGGTTTTCCTCTACAAATTGTGAATGAGCCGGAATCTGATAACAGTGCTTTATCTATTACAAGTTTTGTATTCGTTTTGATGGGCGACAGGAAACAAAGAACATATAAGCTCGCAAGTGCTATGCTTTTTTGTGCATTTTGTCAGGAATCCGACAGCATGTTCGCTATGTGTTGCAATTGTTTTTATCAAGTCATTTAGGGGCTCGGTATGAAAATATCTTGGGGTATTCATGATATGGCACGACAAAAACCAATGAAACGGATTGCTATCTTTTGAGTCTTGTTTCCAAAGTGAAGCCTCAGACCACGCACTTGTTAATTTATCAAGCTGTACATAGTTTTGTAGTCTTTTCTTTTCTCTCCCATGCCTGTTGGCATTGACTGGTTTTGCTGAATGGCTAGACCATCGGCAAACACTAATCTTGCCTCGGCAACAAGCATACGGCCCTTTACGACACCTGAGAGGCAAAGCTGATGGCATTTCTTAATGCAGGCCATTCAGGGCACACTTATGGCATGAGCAATCATTATTACCACTACTGCAGTGGTCGTCAACCCATGTTACAGCCCTTCGGTATACTCACCATACTACTGGTCGCTACAGATTGTGCCATAGCTGACCGAGGCAGTACCGGTAGGCATGAGATACAAGTGACCAGTCAAGCGCCCTGTGCATAGCTAAGGTATATAATGCGCACCTGTACGTTTAACAAGATGTATGAGGTGACAGTTTTTTGGGAAAAAACCCATTTATTCTGTCACAAAGGCCGATTCAATGGTGCTTTTTGGAGCTTTTTGTAATTTTGTGTGTTAAAAAGAAAAAAAAAAACTGTTCCAAAATGACTTGAATGAATGTACTTTTTGTTGGTTAATGTTAAAGTGATACAGAGGTAGCTGGAATGCGGTGAGTGAGATCATGGAAAAACAATGGTATCTCGGTGGCCTTCTGTGTCTTAAATTTTGTTCTTCTAGTTGTTTTTTTTTTTTGGATTTTGTATTAAGACTTTTATTTCGAAAGAGCCTTTGAAATGTAAAATACAAATATATATATAAAATATATATCCTGTACTAACAAGCTATTATGAGAACCCCATTGGAAAAATGGCTCTCAAGTGCAATGTGGAGGCAGCCATTATTTTGCGTAGGATTTGTGGAAGCATGGCTTTCCATATGCGGGCAAACATGGTACCATAATTCTGTGTTCCCCTCTTTGTGTTTTAAGTTTTAATTGCACTTAAAATGTTTCAAACAAAAGCACTTAAACCCAACAGAAAACGTTCTTAATGCCAATTAGTTAGCCTGCCTCTTCAGACAGCCACAATGCTATTTAAATTTTTGTTGTTTTTGTTTTTGTCTGCCACAGTGGTTGAAAATCAAATCCTAAGCCTTTATTTTCCAGTAGGTATTTGCCAAACAGCAGTCAACACTGCACCTTTTGGATGGATCGTATGGCATGTGTAATACAAACAGCAACAGAGTTCAAAATCCCCCTGGACACCAAAGGGCCAGGCTAAATTTTTAACAGCGGTTTTGCACAGTGCTGTAAAAAATTGCACTTTTCTAAACAAAGTATGAGAAAACTATATTCAGTGTTCTAAAATGGACAACATTCATAGGCTTTAATGCGCGTAATGTTGGCGAGCTCTTAATAAATCTGTCCACAGTATCCAAATACGGTTTGATTCATGTTCAAAACAGACAAACTGTAAGATCATTGAGCACTTTTGCTGGATAAATGGACTTTTATGAACATTTTAGAATATAGGGGACTTTAATTGGTGCTCACTTAGCCTGTGTTTGGCTCAATAAGCTCAATAGAACCAAATATTGGTTGATTAATTAGCCTGGCCAATATATTGGTTTATATAAACCCATTTTACTTAGACAGTCATGAAAAACATGCTCAAACTTGAGGTCCTGAAATACTTTATTCCGTGACTGTAGATCCATTTGGCTAAACTGTTTTGTTGTTGTTTTTTGATCTAATCAATAGCTTGAATGTTGTCCATCAGAGATTTACAATATCCCCCTACCACCATTCGTATGCTAATGGACAAGGATAAGATGTTGCCTGTTCAGATATAAAGTGCATCAGGTGAGGAAAGGTTTCAGATCCAGTTGACCATAGACATTTCAAAAGAAAAAAGGTATTATTAGAGCATTACTTTGTTAGATCAACCTTGAACTGCGTAGAAATAATTCTTCACTCCCAATTTTATCTTGCTAGCTCAGTGAGAAGATTTGAATGAAAATATCCATATTAAAGGCCAGTTCATAAATAGAGCCATTAAAAGATGGTAGACCGTTTCTTGGCCCGCACAGTATTCTTTTTTTTTTTGCTCTGCTCTCATAGCATCTTTTTTTTTTCTTTGTTCATGTAAATGCCCAGCATGCAGTGTAGTGATATGTTGTATTTTAAGTGGGGCTTCTTTGCTTGTTAATAAAGCTCCTGCTCAATCCATTAACTTTTATGCTCTAGTGCCACTTGGTGGCAAGGAGTGCCCTGGGAGCCTGGGATGAAGTGAAACTGATCCTCAGGACCCATTTTGATAGAATGAATTCAAATGGAATGTCCAATGGGCAACATCCTTTTGTCCGTCTGCCTTGGAACACCATGTAATCATCATGTACAAGAACATGACTGCTGCTCTTTCATGCTCAGTTGTGTGGGCAAGTGGAGTACAACAGGGATCGCTCTCTGTTCCAATACCAGTATTTATAAACATGGTGTTCTCTTCGCCTAATCGCAAGGAGCATTTTTTTTGGCGTCATTGCGCATCAAACAAGACTGACTACCTTTTTAGCACTTCAAAAGATGCATGAAATTGCTCTTGATCTCTAGTTTGTAGCACTTACTTTTTTTGGTCCGGAAAAAAAAAAGACCAACTGATTTTGCATTTAGCTTTGCAGGTTATCTGTTCGCTTTATATTTTGCTGTACTCTACAACTCAATAAGGCTCAAGTATCATTTTGTTTCTTTCTTATTTGGCACCCAGTAAACTTGTTATGTGCTGTATAAAGCTTTTTTATTACTTCATTCTTAAGGCTGTACAGGGTTGTTTGTGACAATAACTGGTAATTAGATCATTTGTACTTTTGATTTTGTTTTGTATTTCGGTTTGTTATTTCTTGGTTTTGCATTCTTTATGTTCAAATTGCCAGTTCTAAATGTAACAGGATTTGAAAGTAAAGCTTACATCACATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171:ENSDART00000037516:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGAAGCGCTTTGGGG
R:
CCGCTTGTGGAGGTTGAGATT
Band lengths:
357-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]