HsaINT0188488 @ hg38
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145757627-145763122:-
Coord C1 exon
chr4:145763090-145763122
Coord A exon
chr4:145761599-145763089
Coord C2 exon
chr4:145757627-145761598
Length
1491 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TGCGTTGCTTTCCCCGGCAGGTG
3' ss Score
11.8
Exon sequences
Seq C1 exon
CTCAGGACAGTGGTGAGTTTCAGACTCCTCTAG
Seq A exon
GTAAGGCCCAGCTTGGCGTAGGGGTTGTGTGTGCACCTGACCTGGGAATGGGCTTTATATTTCTCTCGTGTGCACTCTTCTGTGAGCTGAGGTTCAAAGGCTAACGGCGAGCTTGGCGCTGAGGAGGCCGTGCACGGTGCACTTGGTTGTGTTGGGCTCTGCTGAACACCTCTCCAGACCCTCCGAGGACAGTCCACTCCTGAGCCCTGCCCTGCAGGAGCCAAGCAAGAGCTGAGGCAGCCACTTTTGCATCTGCATTCTTTGTGGAAAGAGAGCAAACACACTACAGTTCTCATATAAGCCACTGACTCCAGCCTGGCAGCTTCTAAAAGAGAGGCTCAGCAGAGTTTGTTAACATGGCCTCACCACTCCTCGTGGCCCCTCTGGACAGCCAGGAGGGTTGGTGGTAGCGTAGCCTCACTGCAAAGGATGGAGAAACCGAGCCACAGAGAGGCCCAGGCTAGGGTGTCCAGCTCCAGCCTGACAAGGTGATGGAGCTGGGACCAGCATCCGCCCTTCCAGAATCTACCTAAATTGCCTGTAGAGACCACTCAAATAATGAACCAGTATGTCCTGAGTGCTTACCGTGTGTTAAGTACTCTACCAAGCACTGCAGAGAATGCAGAGGAAATGTAAGATATGGTCCTGCCCTCTGAGAATTTCCAATCCAGTTGGATTATTATCCTATCTCCGGCATAATCATGTATTAATAATGTCTTCGAGCTCCAGATAGCAGTTGTCTCCCTCCCTCCTCCCTTCCTCATTAGCAGATGGGCCGTTGGGTGGGCTTCCTTCTCCTCCCATGCCCCTGCCATAGTCCTCAGCTTCCTTTCCTGACAAAGAGCTAGTCCTGTAGGGAGATATGTTTTACGAGTACATAGATATGTACACATGCACACACTCACACAGAGAGACACACACAGGCCTTCTCATCCTAACAAACCCTTAATAAGCACGATTCTGACCCCTGTGACTTTCTGTTTGCTGGAGGTAGCGCTCCCCCTATAAGCTGTTCTTTAAAACCTCTTAGCCTTTCTGCGTGTGCTTGGTGTGGTGCATGAAAAGTCGATTCTTTGTGTTGCTCCCATCTAGAGGGGAGGTCAGGAGGTTTAGACCTCTGCGCTGTCTGGTCGGGAGTGGGGAGGGCTCCGAGGGGCCGGGCGGGGGCTGGAGGGGAGCACCAGCAAATTGATTCCTGGCACTTTCTCTGCTCCCCTTGGTGAGGGCTGGCCTTGCCTGTATCGGCCAAGAGACCCAGAATAGGCTGAGCGGACCTTGCCAGAGCTGCTTGTCAGCGGGGACTGCTCTGTCAGCAGGGAGAGCCAAAAAGGGCCGTTCCACCCCTGAGAGGCGGCAGGGCTGGGCTGGGCTGGGCAGGCCAGGCCTCAGACACTGGGGGGTGGTGTGAGGGAAGGCTGGTGAGGCGGCGAGAAGCGCGGCTGCCTCCGAACCTTCCCGGCTGAACCTCCCTTGCGTTGCTTTCCCCGGCAG
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCCGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACGGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGGGAGCACCGCCTGGGCAACCACTACAAGTGCGACCAGTGCGGCTACCTGTCCAAGACCGCCAACAAGCTCATCGAGCACGTGCGCGTCCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTCAACCTGCACAAGAAGCTGAAGCACGCCCCACGCCAGACCTTCAGCTGCGAAGAGTGCCTGTTCAAGACCACACACCCTTTCGTCTTCAGCCGCCACGTCAAGAAGCACCAGAGTGGGGACTGCCCCGAGGAGGACAAGAAGGGCCTGTGTCCAGCCCCCAAGGAACCGGCCGGCCCGGGGGCCCCGCTCCTGGTGGTCGGGAGCTCCCGGAATCTCCTGTCTCCCCTGTCAGTTATGTCTGCCTCCCAGGCTCTGCAGACCGTGGCCCTGTCGGCAGCCCACGGCAGCAGCTCAGAGCCCAACCTGGCACTCAAGGCTTTGGCCTTCAACGGCTCCCCTTTGCGCTTTGACAAGTACCGGAACTCAGATTTTGCCCATCTCATTCCCTTGACAATGTTATACCCCAAGAACCACTTGGATCTCACATTCCACCCTCCCCGACCTCAGACTGCGCCTCCCAGCATCCCCTCACCCAAACACTCCTTCCTGGCCTATCTCGGACTGAGAGAAAGAGCAGAGACTGTCTGAGGGCAGCCATGTTCTGTACCAAAAACAGAGAGACAAAAGACAAAAAAAAAAAAAAAAACCACAAAACTTAAACACAACCCCAGCAGGTGTATGTTGCTGCAAAACCTACAGACCCCGATGGGTCTGGAACATGTGTACTGTATATCTTTAGTAAGGAATAGAAAATTGGCTCTGTGTGTATACCTATTGCATTGACCTGAAAGCTGCTTTATCCAATCTTCAGAGAGGTGACCTACTGCATACTTCTACCTTCAGAGGCATGCCTCCCCAGCCACCCACTCCCACTCTCAGCCCTTCTCCGTACTTTTCTCTGAAAGGAATCTTGTCTTGTTAAACCCTAAAGAGAGTGTCCTTAATAGCAATCAGCACTTGTAAGCTTATATACTGGTGCATTTGGTTTTCTGTTGGGTGAATGCGGTGTGTGGGCGTTTGTGGATTCTGAAAGAGAAAGCCGTGTGTCGTGTGCCATGACATTTCTATTGCACATTCTTTGTACTGGCTTCTTTAACAGCGATGAACGTTCTTTTCCCTCCTGGGTTGTTCATCCACGACAGTCTCTCCCTGTGCTCCTTCATCACCTTTCCCTCTCTCTTTGATGGCTACAGAGTGGTAGGGCCTGGTGCTTAGTCGATGAAGGAATGGTAGCCATCTACAGTGCTGCTGGAGATTTCCGCCAGAGCGCTGGAGACCTTGCGCTCAGATCTTCTCTGGTGATGAAGAGGCGAGGAATCAAGTGACTGATCTGGAAGAAATATCTCGCAGCACTGCAGCTAACATCACAGAACTTAAGTGTGTTTTGTGTGTGTGCCCACACGTAGACAAATGTGTACGGTGCACACACACAGTGCATCATTTTTTAAGGGCAGATTATATATATATATGAGATGTATTAATTCAGTGGTTACCATTTGTTTGCAGGAAAAAGAAATGTATGGGTGAAAAAATTTATGGTTGATAAATCCAGCCAAGGAGATTAAAAGGGGTTTGGATAAATTCTGGGTATAAATGCTCAGACTAAAAAAAAGAAATGGCAGTTTTGCACAGTGCTATGGTCTTGCACTAGTTTTTGTTTCTCATCTGAAAAAAAAAAAGTAAAATAAAAGGAAGAAAATGTACCTTTTTTATGGAATGAGTAGACTGTATGTTTGAAGATTTAGCCACAACCTCTTTGACATATAATGACGCAACAAAAAGGTGCTGTTTAGTCCTATGGTTCAGTTTATGCCCCTGACAAGTTTCCATTGTGTTTTGCCGATCTTCTGGCTAATCGTGGTATCCTCCATGTTATTAGTAATTCTGTATTCCATTTTGTTAACGCCTGGTAGATGTAACCTGCTAGGAGGCTAACTTTATACTTATTTAAAAGCTCTTATTTTGTGGTCATTAAAATGGCAATTTATGTGCAGCACTTTATTGCAGCAGGAAGCAGGTGTGGGTTGGTTGTAAAGCTCTTTGCTAATCTTAAAAAGTAATGGGTGATTTAAAAAGAAAAAAGGAAAAAAATCTTTGGCTGAATATGTTCATTGCTTGTATTTTTAAAACAACAGAATTTCCAGTATGAAACAGGCTGAAAGAGCAGGAAGAAATGTTCTTTGTATAATAATGGGAAGTTTGGAATATAAAAGTTTATATATTATTTATCTATTGGAGAACTGGTGTACAGGAGGAACATTTTCTTACTGTGTTGCTGTTTTCCATCATGTGTTATCCTAAGAGTTGGGGTTTTTTAAAATCTGTTTCACCAGGGGAAAATAAAAGCATCCCTAATGTTCTTCCTCTAGTCAGTTTGCTTTGCTGAAAGCTCCCTGGAAATTAGTACAGTTCTACAGGAAGCCAGAAGACTGTACTGTCTGTCCACACCATGGTCTCCTCAGTCCCCTCCACGCCAGCCCCTCTTCCCCACACCTAGTAGGTGTGCTACACCTCCCTTTGCCAGTCATCCCGCCATGGATGGGGAGCCTACTTGGTGCCCTGGCAAACCTGTTTACACTAAGGAGATGCCCACAGGGAGCGGGAAGCTCCCAAACCCTCAGTCATTCTCCAGCAGAGACCTTTGCTCTTGGCCAGGTTTGAAACGATGTTCAACCTCGCCACGTCAATGTCTCAGTAAAAGACACTATAGATAGTTATGGACAATACACTCCAAGAATACTGGGCTTATGGGTGGGTTGGTTTTTTGTTTTGTTTTGTTTTGTTTTCAAGTCATGTCTTTATCCCCATATAATGGAGAATGTGCCACTTGGCTAATAATGTGTTTTCAAAACTACAAGTTCAGTGATGACAGGAAAGAGGGCTAAAGTAGTCCCACAGAGGCTGGTAGAAAAGGCGAATCACACTTAAGCACCAGCAGGTTAAAAACCTGAAAGGGTGGCCCTGACAATTCAGACTATAGGTTTTACAGCATGCCACTTGTGCAATAGGAGGTCTAGGGTTGAAACTTTCAAGAACGAGAGGAGGTGAAGGAAGGAGACGTTTACTGCTCAAATGCCATGCATTTCACTGCTTGCCACTGAACTTGTATTTGAATGACTTAGTAATGCTTAATATAATTGGGCAACTTTTTTAGCACTTTGGAAAGAGTCATCAATCTTTCTGGTAAATTATAAAAGTTTTCTGAGTGAGAAAAGGTGTGTTTGGAGTTTGTTTGACTTTTTATATTATTATTGTTATTAATAAAGAAAAAAATCTACAGCATTTTTCAGACTCCACCCTAGAAAATATGTACCCCTGAATTTGGTTTGCAGTTTGATACTCAGGGAAGGATGTATTCCATAGATATCCTTTCCGTATAAAACACTAACATCTTTGAGAAATTCACCTACCAACTAACTTCAATTGTTGTCACTATGCATTCTTCAATGAAAACTAGCTTATTTTTCCATATAGTAATGCAGTTAGGGTTCTCAGCACTTTCTTTCTTCTATCCTTTTTTTAACTCTTCATATTATGTTCAGATGATCATACTGTCAAGGTTTGTGTACATTACTGAAAATTTGTATTGTATAAAGCTTTTTGCATTACGAGGCTGTACAGGGTCATTTTGACAGTAACTGGTATATTCCTTTGCATCTTATGTTGCATTGCCAATTTCTAGTGTATCCAGTTTGAAAGTATAATATACTCTAATTAAAAAAAAAAAAAGGTTGGCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612:ENST00000508784:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139091=zf-H2C2_5=PD(91.7=13.9),PF134651=zf-H2C2_2=WD(100=16.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACAGTGGTGAGTTTCAGAC
R:
TGCTTCAGCTTCTTGTGCAGG
Band lengths:
346-1837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains