HsaALTD0007522-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145757627-145765055:-
Coord C1 exon
chr4:145764988-145765055
Coord A exon
chr4:145764979-145764987
Coord C2 exon
chr4:145757627-145761598
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
3' ss Seq
TGCGTTGCTTTCCCCGGCAGGTG
3' ss Score
11.8
Exon sequences
Seq C1 exon
TTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAGGAAA
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCCGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACGGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGGGAGCACCGCCTGGGCAACCACTACAAGTGCGACCAGTGCGGCTACCTGTCCAAGACCGCCAACAAGCTCATCGAGCACGTGCGCGTCCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTCAACCTGCACAAGAAGCTGAAGCACGCCCCACGCCAGACCTTCAGCTGCGAAGAGTGCCTGTTCAAGACCACACACCCTTTCGTCTTCAGCCGCCACGTCAAGAAGCACCAGAGTGGGGACTGCCCCGAGGAGGACAAGAAGGGCCTGTGTCCAGCCCCCAAGGAACCGGCCGGCCCGGGGGCCCCGCTCCTGGTGGTCGGGAGCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-52-54,53-54,54-54-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=PU(4.2=4.3)
A:
NA
C2:
PF139091=zf-H2C2_5=PD(91.7=13.9),PF134651=zf-H2C2_2=WD(100=16.5)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGCCACACTGTCCCC
R:
GTCTTGAGGTGGCACTCCATG
Band lengths:
95-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains