BtaALTD0024915-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12737293-12739481:+
Coord C1 exon
chr17:12737293-12737470
Coord A exon
chr17:12737471-12737479
Coord C2 exon
chr17:12739466-12739481
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGCCATCTGCAGATCCACCTCATCACCCGGATGTTTGAGTGCGACGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAACATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAGGAAA
Seq C2 exon
CTCAGGACAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-16-22,17-22,18-22-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development