BtaINT0166144 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12737293-12739481:+
Coord C1 exon
chr17:12737293-12737470
Coord A exon
chr17:12737471-12739465
Coord C2 exon
chr17:12739466-12739481
Length
1995 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGCCATCTGCAGATCCACCTCATCACCCGGATGTTTGAGTGCGACGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAACATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAGGAAAGCAAGTACAGAACCTTTTACTGTGTTGTTCTATTAAACACCCTGCCTCCACCCCTGCCCCATCCCCTCCCCTGAAGGTTTTTGGGGTCATGGAGAGGGCGAGCTTGGCCTGGGTGGGGGCATTAGTCGGGCACACCTCTGCTGCCTTTAGCTGGATAGGAATTAGACCTGTCCCCAAGGGGGTCTGCCGATGTCAGCACGAGACTCCCATTTCCCAAGATGGTCAACTCGCTGAAGCAGCCCAACACGGGCATGTAAGAGCAGACTCAGCCTACACCACTTGAGTTCCGTTCAGATTTGATTGTAAGGGACTTAGGGGTTATAACCTGTCCGCACGTGCAAATCATTACACTGTCACTGCACTTCACCATCTCTATTTTTTAGATGATTTGCCACAAGTCTTTTAAATAAGCACTACAACTACCCCAACCACACCCGCCTCCAGATATCGGATACTTGCCAGTGTGAACAGGCAAGAGGCAACATTTTCATGCAGAGATCACGTGCCTCGTGTCTTCCTGCAAACATGCCTTACGCCTTCCCGGGAACTGGAATTGGGATCTTGCTGGTGTCGCCTTCGTGAGATCTGACACCTCTGATCACATGTTCTTTGCAGATCCCCAAAGACCTAGACAATGAGCATCATCATTAACCAACATTTGCAACAAGCCCTCTGGTCAGAAGAGAGACCCATCCGTTATTATCAAAACGCGCTGTGTGTCTGGCTTGATAATAGGTGCTAAAGGGCAAACAAGGAATAAAACATAATTCCACCCTCGGGAAATGTACGTCCGAGCTCTACCAGAGTTTCATCTTCCTGGCGCTTCTGAAATCAGAGGCCCCGTTCACGAGGGTCTTGTGTTCTAGGAAAGGAGAAAGAAGCATCTGTCACTGGGCACAGAAAGACACACCATTTTCAAAGCATAATTATTCATGTTTAGCTGAACTGATGGTGTAATTAAAAGAATGAAAAATGACATTTTACTTAACACAAGAACAAGAACACCTCTTGTTTTTAAAAACATGTTTATCTTTGAAACTCACAGCTTGCCAAGAGAAGAGGCATGACTGTCCTGAATGGGCGAGGGGTGGATCGACCCAGCAGGAGCTCGGGAGTCAAGTGTGGGGGGCAATGCAGGGTGGAGTCCCTGGGCTCCGGCCCGGTCAGGGGAACCCTCCTCAAACACTCCTCCAGACAGAGGAAGTGGCACCCGCTGTCAGATCCCATTTTGGTTCACTGTTGGGGCTGATTAGGTGGGGCGGGGGGAGGGTAGGAGGAAGCGGAGTGGGGCGATGAGCATTCAAGAATACGTGAACGGGAAATGCCTAGCACGTGCTTATTTGGGAATTTGATTTGGTTTATTCCCACTGCCCCCCTCAAAATATACGCGTACTCTTACGTATTTTTTAAAAAGCCACGTATTTCCTTGGTTGGTTTAGCGCTCACTGCCCTTCCTAGAAGCCCAGTCACGCCCGTTACCTGTGGCCCCAGCCAGTTGTGGCTTTGCCAGTTAGAACCCCCTTTCCTCGGGGACCTACGGTGTTCCCGAGCCCCAGGCCCACTGGCGGGGATGCCACGTGAACCTGATGCTTTTGCAGGTGTAGACACTTCCCATGCAGTGCTAACGGTCCCTGATGTAATAGTTCATGTTCTAGGCTGACCAAGTAGAAGAATACTTTGACAAAATTGCTAATACCTTCTGGCTATACAGTGAGTCTTTTTTGTTTTTGTTTTGTTTTCCCTTTTCCGTCTCAGAGAAGTAATTTGTCAGAGAGTCTTTACGATAAATAACGGGAACGTAGAAAACCCTTTCCTTCTGCCTGAGCAGCGAAAGAAAGATTGAGCCATGGGTCACAGAAACGTCCTTAACATGAAACAGACTGCTGATGTCTAAATTGCTTTTCTGTGATGGGACTGCTTGTACTCTATATCCTGTTCATAATGCAGATCAAATAAGATTATACTATTATTTTTCTTTTGCCGTAG
Seq C2 exon
CTCAGGACAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738:ENSBTAT00000016933:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development