RnoINT0168683 @ rn6
Intron Retention
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32401661-32403682:-
Coord C1 exon
chr19:32403505-32403682
Coord A exon
chr19:32401677-32403504
Coord C2 exon
chr19:32401661-32401676
Length
1828 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAGGAAAGCAAGTACAGCGTCTCTTACTGAGTTGTTATTCACTGAGTTGTTACTCATTGAGTTGTTATTAAGCACCCCTTCCCCTCCCTCCCCGACCCCCATGAAGGTTTTGGGGAATGCGGGAGCTTAGTATGAGGGCAGTTAGTCAGAAAGATCTGCTGCCTCTGGCTGGCTGGGACCCTAGCTGTCCTCAAGGGAGTCAACAGACATTATTAGCAGGGAAAGCCACTCCACAAGTGCTCCAGGCTCCCAGCAAGCAAGAGCACAGAGTGTCTGGCCAGCAGAAAGCAGGCTTCTACTGCAGTGGATCTGAATGTAATGGAAGCCAGACTAGCATCCCCATGTGTGTAGCATTTCACAGTTGTCACTGCAAGTCACTGCATTTATTTTTTAGATGGCCTGACATATATTTAGCTCTTAAGTACTAGAGGCACCCAGCCCCCAAGTAGGACCTTGGTGGTTTGATCAGACAAGAGGCCAGGGTGTTCATGCAACATCACGTGTTTCTCGTCTCCTGCAGACATGCTGACGCCTTCCCAAAAGAGCTAGACAGGGAGCGTCATCCTCTAGCAGTATTTGCAACAAGGTCCCTGGCCTCAAGTGAGACCCATCAGTTATTACGAAGCAAACTGTGCCACTAGCCTGACATAGGTGCTGAAGGACTCGTGAAGAATAAAATAGCATTTCCACCTTATAAATGTATGTCCCAGAACTACCAGAATTTAATCTTACGGTGATTCTGGAGGCAGAATCCCTGTCACAAGACATTTTGGATCTAGTAAAAGAAGCAGAAGCATAAAACAGTTGGGTACAGAAAGATACAATCGTCAAGGTATTTTATCTAAAATCGCCATGTAGTTAAAAGAATCAAGGGACACCTTTTTATTTTATTAATATAAGTGGGGGATGGGTCTTTCATTTTAAAACATTTTTACCCTTGAAACTCACAATGCCTCCTGAATGGGTAAGAGTCGGAGAGCCCAGAGGGATCTGGAACAGAAATATTGGGGGTGGAGTCGGGGTTGGCTGGTCAGGGCATCCTCTGGGGGAAAAAAAAAAAACAATAGACGGGAAGAGTTGGGGGATGGCAGGACTGCTGATCCCATCTCATGTGGATCTACCCTTGGGTGTACCCTTGGCGGGTGGGTCACAGGCAAGAGGGTGACTTTATAATTCATTCACCCAATAGATAGGAAATGCCTAGCAGAAGCTTATCAGGGACTTTGATTTTAAGTCCCTCCACCTCCTTATGGAAAAGTGTGTATTCTTTATAAAAAGAAGAGCCCCGCCCCCTGTGGATGGAGCAGTGTCATTGCCTTGTGGTAGGTCAGTCACAGCCACGCCACGTGCGGCCTTGCCACTCACCCTTTGGAACCCTAAGCAGGCCTGAGCCTCTGATGCACCGGGGAGACCACAGGATAACCTCAGTGCTGTCCCTGGGTCAGACACCGCCTGGCGGTGCTAACCATATGTCCCCTGTGTGAAGTTTGTCCTAGGATGACCAAGTAGAAGAACACTTTGAAAAAAAATTACTGATAATGCCTTGTGGCTATACAGTGAGTTTCGTTTGTTTCTTTTGCAATATCAGAGAATCAGTTTTCCTGAGAAAGTGTCTTTGAGATAAAAACGGGAGCATAGAAAAGCCCCAGTGCTTTGACGAGCCGTGCAGTAACAGATTGAGCTGAGGGTCACAGAAACACCCTTAGCGGGAGGCAGACCGACCGCCGATGTCTAAGTGCTTTTCTGTGATGGGACTGCTTGTACTCTATATCCTGTTCATAATGCAGATCAAATAAGATTATACTATTATTTTTCTTTTGCCGTAG
Seq C2 exon
CTCAGGACAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697:ENSRNOT00000015929:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]