HsaINT0188487 @ hg19
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:27193]
Coordinates
chr4:146684242-146686317:-
Coord C1 exon
chr4:146686131-146686317
Coord A exon
chr4:146684275-146686130
Coord C2 exon
chr4:146684242-146684274
Length
1856 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGTCATCTGCAGATACACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAAGTAAGGAAA
Seq A exon
GCAAGTACAGAACCTTTTACTGCGTTGTTATTAAATACCCTTTCCCCTTCCCTACCCCGTCCCTTCCCGTGAAGGTTTTGGGAGTCATGGAGAAGGGGAGCTTGGTATGAGAGGAGTTAGTCAGGAACCCCTGCTGCCTTTAGCTGGATTGAATTAGACCTGTCCCCCTAGGGTGTCAACAGATGTCAGTAGGAGAATCCATTTTGCAAATACCCCGGGATTCAGGGCAAGAAAAAAGACACGTTGAAACAACCCAGCATGCAAGAATAGACTACACTGCTTGAGTTTTGTTCAGACTTGATTTTAATGGACTCAGGGCTTAGTGTCCCCAAGCATAAATCATACTGTGACCGAGATTCACCTTCTCTGTTTTTCCGATGGCTTGCTACATATCCTTTAAGTAAGCATTGCAACCACCCCACCCTCCAAAATTGGACAGTTTGAACAGGCAGGAAGCAACATTTTTCATGCAACGATCATGTGCTTCATGATCCTCCTGCAAACATACTGATGTCTTCTTCCCAAGATCTAGACAACGAGCATCATCTTTAACCAGTATTTTCAAGAGGCCCTTTGGTCTCAAGTGAGACCAATCAACTAATATCAAACGTACTGTGTGTCTGGCTTGATAACAGGTGCCAACAGGCACACAGGAATAAAACACCATTTCCACCCTCAAGAAATGTATGTCCTAGTACTACCTCATCTGCACAGTGAAATCAGAGTCCCTGTTCACAAGGCACTTAGGGTCTGGTAAAGAGAAAGCAGCACAGGTAGGAGGACACAGAAAGACACAGTTTTCAAGGCATAATTACTAATTCTCAGCTAAACGATCATGTTGAATGAAAAATTACATTTTACTTAACACAAGGGGGAAAAAACCTTTTGTTTTAAAACATGTTCGTCATTGAAACGCACAACCTGCCAGAGAGGTGGCATGACTCCCCTAGATGGGTGAGGAAGGGAGAGATGGAAAAGACCCTGGGAGTGGAGTGTTGGGGTCAGTGCAGGTTGGGTCCCCCCAGGCCCCTGCCTCCTCAAAAACTCCCCCACATAGAAGAGTCAGGGAACAACAGGACCTCCGTTGAACTCCATTTCGTTTCACTCTTGGGGGAGGGGGAGGGGAGGGCAGAAGGGATTGGGGAGGGGGTGATTATAATTCAAGGAAACCAGTAGATGGGAAATGCCTAGGAAGAGCTTATTTGGGGATTTGATTTGGTTTGTTCCCACTGTCCCTTTATAAATATTTGTGTGCTCTCATTTTAAAAAGAGAAACACCAGAACCATGTTTTTCTGTGGTTGGACCAGTGCTCACTGCCCTTCCCAGTAGCCCAGTCACACCCATGAACATTGCAGCCCCTGCCAGTTGTGGCTTTGCCAGTTCGCCTTTCCTCAGGGACCTCCAAAGTCCCCAGCCTCTGAAGCCATTGGGGAGAATGCACAGTGAATTCTGATGCTTTTGCTGGTACAGACACTTCCCGTGCGGTGCTAACCGTCCCCTGTGTAATAGTTTATGTTCTAGGATGACCAAGTAGAAGAATACTTTGAAAAAATTGATAATGCCTTCTGGCTATACAGTGAGTCTTTGTTTTGTTTTGTTTTGTTTCCTTTGCCATATCAGAGAATTAATTTGCCTGAGAGAGTGTCTTTAAGAAAATAACGGGAGCACGGAAAACCCTTAGCACTTTGCCTGAGCAGTGAAAGAAAGATTGAGCTGTGGGTCACAGAAATGTCCTTAAAATGAAACAGACTGCTGATGTCTAAATTGCTTTTCTGTGATGGAACTGCTTGTACTCTATATCCTGTTCATAATGCAGATCAAATAAGATTATACTATTATTTTTCTTTTGCCGTAG
Seq C2 exon
CTCAGGACAGTGGTGAGTTTCAGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-ZNF827:NM_178835:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=39.3),PF121713=zf-C2H2_jaz=WD(100=36.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAACTTTGTCTGCAAGA
R:
AGTCTGAAACTCACCACTGTCC
Band lengths:
198-2054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)