MmuINT0179949 @ mm9
Intron Retention
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81710075-81712080:+
Coord C1 exon
chr8:81710075-81710252
Coord A exon
chr8:81710253-81712047
Coord C2 exon
chr8:81712048-81712080
Length
1795 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAGGCAAGCAAGTACAGAATCTTTTCTTGAGTTGTTATTAAGCCCCCCTTCCTCCTGCCCTACACAATCCCCCCATTAAGGTTTTGGGGGGTCACAGAATTGGGGAGCATAGTATGAGGGGATTTAGTCAGAAAGACCTGATGCCTCTGGCTGGATGGGATTCCAGCTATCCTCAGGGGAGTCAACACACACCAGGAGGAAAAGCCACTTCACAAGTACCCCAGGCTCACAGCAAGGAAGAGCACGAAGTGTCAGCCCAGCATGAAAGAGTAGACTCCTACTGCAGTGGATTTGACTTTAATGGATGCCAGGCTAGCATCCCATGCATGGAGCATTCCTCAGTTGTCACTGCAAGTTACTGCATTTATTTTTTTTTTTTAGATGGCCTGATACATATTTAGCTCTTCAGCACCAGCCCCCAAAGTAGGACCTTGTTGGTTTGATCAGACAAGAGGCAACATCAGGTGCTTCTCGTCTTTGTGCAGACATGCTGATGCCTTCCCAAAAGATCTAGACAAGGAGCGTCATCCTTACTACGCAGTATTTGAACATGGCCCCTGGCCTAGTGAGACCCATAAGTTATTACCAAGCAAACTGCGAAACTAGCCTGACCATAGGTGGTAAAGGACTCGTGAAGAGTAAAATATCATTTCCACCTTAAGAAATCTATATCCCAGAACTACCCGAGTTTAATCTTCCAGTGATTCTGGAAGCAGAGTCACTGTCACAGGACACTTTAGATCTAGTAAAGAAAGAGAAGCCTCAAATAGTTAGGTACAGAAAGATACAATTGTCAAGGCATTTTTTAATCTAAAATCACCATGTAGTTAAAAGAATCAGGGACACTTTATCTTTTATTTTCTTAATATAAGCAGGGGAGGGGTCTTTCATTTTAAAATATTTTTTATCCTTGAAACTCACAATGCCTCATGAATGGGTAAGAGTTAGAGAGCCCACAGGGACCTGGAGCAGAGTATTGGGGGTGGAGTGGGGCTGGCTCGCCATGGCATCCTCTGAAAAACAAAAAAAGGGGGGGAGGAGAGTTGAGGAATGGCACCAACTGCCAATCCCATCTCTTTTGGATCTACCCTTGGGGATGTGTAGGTGGGCGGGCCATAGAGAAGAGGGTGGTTTTATGATTCATTCAACTGGTAGATGGGAAATGCCTAGCAGAAGCTTATCAGGGACTTTGAGTTTAAACCCTCCACCTCTTTATGGAAATTTGTATTTTCTTTATTAAAAAGAAGAACCCCGCCTCCTGTGGATGGAGTCGTATCGTTGCCTTGTGGTAGCTCAGTCATGCCCAAGCTACACCTGGCCTTGCGGCTCACCTTTCGGAACCCTGAGCAGGCCTGAGCCTCTAATGCACCAGGGAGCCCTCAGGATGACCTCAGTGCTTTTCCTGGACCAGACACTGCCTGTTGGTGCCAACCGTCCCCTGTATGATAGTTCATGTTCTAGGATGACCAAATAGAAGAACAATTAAAAATATATATATATTGATAATATCCTCTGGCAATACAATGAGTTTTGGTTTTGTTTCTTTTGCAATATCAGAGAATTAATTTTCCTCAGAAAGTGTCTTTAAGATAAATAATGGAAGCATGGAGAAGCCCCGGTGCTTTGCCCGAGCAGTGAAATAACAGATTGAGCTGAGGGTCCCAGAAACATCCTTAACGTGAGGCAGACCGCCGATGTCTAAATGCTTTTCTGTGATGGGACTGCTTGTACTCTATATCCTGTTCATAATGCAGATCAAATAAGATTATACTATTATTTTTCTTTTGCCGTAG
Seq C2 exon
CTCAGGACAGTGGTGAGTGTCAGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-Zfp827:NM_178267:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7),PF139091=zf-H2C2_5=PU(0.1=0.0)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGCAACTTTGTCTGCAAGA
R:
GTCTGACACTCACCACTGTCC
Band lengths:
190-1985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: