MmuINT0179949 @ mm10
Intron Retention
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79186176-79188181:+
Coord C1 exon
chr8:79186176-79186358
Coord A exon
chr8:79186359-79188148
Coord C2 exon
chr8:79188149-79188181
Length
1790 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAAGTAAG
Seq A exon
GCAAGCAAGTACAGAATCTTTTCTTGAGTTGTTATTAAGCCCCCCTTCCTCCTGCCCTACACAATCCCCCCATTAAGGTTTTGGGGGGTCACAGAATTGGGGAGCATAGTATGAGGGGATTTAGTCAGAAAGACCTGATGCCTCTGGCTGGATGGGATTCCAGCTATCCTCAGGGGAGTCAACACACACCAGGAGGAAAAGCCACTTCACAAGTACCCCAGGCTCACAGCAAGGAAGAGCACGAAGTGTCAGCCCAGCATGAAAGAGTAGACTCCTACTGCAGTGGATTTGACTTTAATGGATGCCAGGCTAGCATCCCATGCATGGAGCATTCCTCAGTTGTCACTGCAAGTTACTGCATTTATTTTTTTTTTTTAGATGGCCTGATACATATTTAGCTCTTCAGCACCAGCCCCCAAAGTAGGACCTTGTTGGTTTGATCAGACAAGAGGCAACATCAGGTGCTTCTCGTCTTTGTGCAGACATGCTGATGCCTTCCCAAAAGATCTAGACAAGGAGCGTCATCCTTACTACGCAGTATTTGAACATGGCCCCTGGCCTAGTGAGACCCATAAGTTATTACCAAGCAAACTGCGAAACTAGCCTGACCATAGGTGGTAAAGGACTCGTGAAGAGTAAAATATCATTTCCACCTTAAGAAATCTATATCCCAGAACTACCCGAGTTTAATCTTCCAGTGATTCTGGAAGCAGAGTCACTGTCACAGGACACTTTAGATCTAGTAAAGAAAGAGAAGCCTCAAATAGTTAGGTACAGAAAGATACAATTGTCAAGGCATTTTTTAATCTAAAATCACCATGTAGTTAAAAGAATCAGGGACACTTTATCTTTTATTTTCTTAATATAAGCAGGGGAGGGGTCTTTCATTTTAAAATATTTTTTATCCTTGAAACTCACAATGCCTCATGAATGGGTAAGAGTTAGAGAGCCCACAGGGACCTGGAGCAGAGTATTGGGGGTGGAGTGGGGCTGGCTCGCCATGGCATCCTCTGAAAAACAAAAAAAGGGGGGGAGGAGAGTTGAGGAATGGCACCAACTGCCAATCCCATCTCTTTTGGATCTACCCTTGGGGATGTGTAGGTGGGCGGGCCATAGAGAAGAGGGTGGTTTTATGATTCATTCAACTGGTAGATGGGAAATGCCTAGCAGAAGCTTATCAGGGACTTTGAGTTTAAACCCTCCACCTCTTTATGGAAATTTGTATTTTCTTTATTAAAAAGAAGAACCCCGCCTCCTGTGGATGGAGTCGTATCGTTGCCTTGTGGTAGCTCAGTCATGCCCAAGCTACACCTGGCCTTGCGGCTCACCTTTCGGAACCCTGAGCAGGCCTGAGCCTCTAATGCACCAGGGAGCCCTCAGGATGACCTCAGTGCTTTTCCTGGACCAGACACTGCCTGTTGGTGCCAACCGTCCCCTGTATGATAGTTCATGTTCTAGGATGACCAAATAGAAGAACAATTAAAAATATATATATATTGATAATATCCTCTGGCAATACAATGAGTTTTGGTTTTGTTTCTTTTGCAATATCAGAGAATTAATTTTCCTCAGAAAGTGTCTTTAAGATAAATAATGGAAGCATGGAGAAGCCCCGGTGCTTTGCCCGAGCAGTGAAATAACAGATTGAGCTGAGGGTCCCAGAAACATCCTTAACGTGAGGCAGACCGCCGATGTCTAAATGCTTTTCTGTGATGGGACTGCTTGTACTCTATATCCTGTTCATAATGCAGATCAAATAAGATTATACTATTATTTTTCTTTTGCCGTAG
Seq C2 exon
CTCAGGACAGTGGTGAGTGTCAGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064:ENSMUST00000119254:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAACTTTGTCTGCAAGA
R:
TGACACTCACCACTGTCCTGA
Band lengths:
190-1980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types