MmuEX0053647 @ mm10
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79186176-79193743:+
Coord C1 exon
chr8:79186176-79186358
Coord A exon
chr8:79188149-79188181
Coord C2 exon
chr8:79189667-79193743
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAAGTAAG
Seq A exon
CTCAGGACAGTGGTGAGTGTCAGACTCCTCTAG
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCTGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACAGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGCGAGCATCGCCTGGGCAACCACTACAAGTGTGAGCAGTGCGGCTACCTGTCTAAGACGGCCAACAAGCTCATCGAGCACGTGCGCGTGCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTTAACCTGCACAAGAAGCTGAAGCACGCCCCCCGCCAGACCTTCAGCTGCGGAGAGTGCCTGTTCAAGACCACACACCCTTTTGTCTTCAGCCGCCACGTGAAGAAGCACCAGAGTGGAGACGGCCCTGAGGAGGACAAGAAAGGCCTGAGTCCAGCCTCCAGAGAGCCAGCTGGCCCTGGAGCCCCGCTCCTGGTTGTGGGGGGTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'33-38,'33-36,37-38
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.212
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7)
A:
NO
C2:
PF139091=zf-H2C2_5=PD(91.7=8.0),PF134651=zf-H2C2_2=WD(100=9.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCCACACTGTCCCCAC
R:
TCCGGCACTTGTACTCCATCT
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types