MmuALTD0016255-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79186286-79193743:+
Coord C1 exon
chr8:79186286-79186353
Coord A exon
NA
Coord C2 exon
chr8:79189667-79193743
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
ATTGCTTCTTCCCCTGGCAGGTG
3' ss Score
11.38
Exon sequences
Seq C1 exon
TTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
NA
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCTGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACAGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGCGAGCATCGCCTGGGCAACCACTACAAGTGTGAGCAGTGCGGCTACCTGTCTAAGACGGCCAACAAGCTCATCGAGCACGTGCGCGTGCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTTAACCTGCACAAGAAGCTGAAGCACGCCCCCCGCCAGACCTTCAGCTGCGGAGAGTGCCTGTTCAAGACCACACACCCTTTTGTCTTCAGCCGCCACGTGAAGAAGCACCAGAGTGGAGACGGCCCTGAGGAGGACAAGAAAGGCCTGAGTCCAGCCTCCAGAGAGCCAGCTGGCCCTGGAGCCCCGCTCCTGGTTGTGGGGGGTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-32-38,33-38,34-38,35-38-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7)
A:
NA
C2:
PF139091=zf-H2C2_5=PD(91.7=8.0),PF134651=zf-H2C2_2=WD(100=9.5)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGCCACACTGTCCCC
R:
GTCTTGAGGTGGCACTCCATG
Band lengths:
95-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types