RnoALTD0034648-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32401661-32403647:-
Coord C1 exon
chr19:32403505-32403647
Coord A exon
NA
Coord C2 exon
chr19:32401661-32401676
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
ACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
NA
Seq C2 exon
CTCAGGACAGTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-26-33,27-33,28-33-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]