MmuINT0179950 @ mm10
Intron Retention
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79188149-79190856:+
Coord C1 exon
chr8:79188149-79188181
Coord A exon
chr8:79188182-79189666
Coord C2 exon
chr8:79189667-79190856
Length
1485 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATTGCTTCTTCCCCTGGCAGGTG
3' ss Score
11.38
Exon sequences
Seq C1 exon
CTCAGGACAGTGGTGAGTGTCAGACTCCTCTAG
Seq A exon
GTAAGGCCCAGCTTGGCGTAGGGGTTGTGTGTGCACTTGACCTGGGAATGGGCTTCATATCTTTGTGCACTCTTTTGTGAGCTGAGGTTCAAGGGCTAATGGCGAGCTTGGTGCTGAGGAGCCAGTGCACGGTGCACCTGATTGTGTTGGGCTCTGCTGAACGTCTCTCCAACCCTCTGAGGACAGCCCCCTTGTGAGCCCTGCCTGCCTTGCAGGAGCTGAGACCAAGCTGAGGCAGCCACTCAGGCTTCTGCATTCTTTTTGGAAAGAGCACACACGCTACATTGTCCTATAAGCCACAGACTCAAACCTGGCAGCTTCCAAAATTGAAGCCCAGCAGATCTGTAAACATACCCACCCCACTCCCCACGACCTCCCTGACAGGGACAGGCCCGGTGGTAGCGTAATCCATGGTGGGAAGAATGGAGAACCCAAGCCAGAGATACCCAGACCTTGTGCTAGAGGACACACTCGAGCCCAGTCAGGAGCCAGAGCTGGGACTCAGCCGACCATCGTGAATCTACCTCAGTTATCCATAAAGATGCTCAGCTCACGACTCAGTATGTCCGGAGTGCTCTTCTGAGCACTGAAGAAAATGCAAAAGAAATCTCAAAAAAGTCCTCCCCTCAGAGAATTCGTGTTCCAGTTGGATCACTGGCATTTCTATGACATGACTATGTCCTAAGAGTGCCTTCAGACTCTGGAGAGCAGCCCCAGTCCTCCTCATTCTTCATGAGCAGAGGGGGCATTGCGCGGGCTTCCTTCTCCCAGGCCCCTACCATGGTCCTTACCTCCCATCCCTAATGAGGAACCAGTACTGTAGGAGAAAGCATTCTGAGAGTCCACGATGTTGGTACACACACACACACACACACACACACACACACACACACAGAGGCACGCACACCATTGGCACACAGAGGGACACGCACAGGCCTTTTCATCCTAACACCCCTTTAATAAGCACGACTCTGACTCCTGTGACTTTCTGTTTGCTGGAGGTAGCTCTCCCTATAAGCTGTTCTTTAAACCTCTCAGCCTCTCTGCGTGTGCTTGGTGTGGTGCATGAAAAGTCGACTCTTTGTGTTGCTCCCATCTAGAGGGGAGGTCAGGAAGCCCGGACTTCTGCCGTGTCCAGTGGGGGAGGGGGTGGAGAGGGCCCCAGGGGCTGGGTGGGGGCAGGAGGGGAGTACCAGCCTTATCTACTCCTCAAGTCCTCTGCTCCTTTGAGAGGACTGGCCTCTGCTGCTGCAGCCTAGAGCCCCCAAACCAGCTAAGTGGACCGCCCAGAGCTCCCTGTTAACCTGGACTGCACTGTCAGCGGTGAAGCCAAGCAGGGCCATGTGAGAGGTGGCAGGGCCGAGCAGGCCAGGCCTTGGGGGACCCAAGGGCTGACCCAGGGCAGGCTGGCGAGGAGGGGAGATGCAGGGTTCCTCGTGGACCTTCCATACTAAAGCTCCCTCCAATTGCTTCTTCCCCTGGCAG
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCTGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACAGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGCGAGCATCGCCTGGGCAACCACTACAAGTGTGAGCAGTGCGGCTACCTGTCTAAGACGGCCAACAAGCTCATCGAGCACGTGCGCGTGCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTTAACCTGCACAAGAAGCTGAAGCACGCCCCCCGCCAGACCTTCAGCTGCGGAGAGTGCCTGTTCAAGACCACACACCCTTTTGTCTTCAGCCGCCACGTGAAGAAGCACCAGAGTGGAGACGGCCCTGAGGAGGACAAGAAAGGCCTGAGTCCAGCCTCCAGAGAGCCAGCTGGCCCTGGAGCCCCGCTCCTGGTTGTGGGGGGTGGCCGGAGTCTCTTGTCCCCACTGTCGGTCATGTCTGCCTCTCAGGCTCTGCAGACCGTGGCCTTGTCAGCAGCCCACGGCAGCAGCTCAGAGCCCAACCTGGCACTCAAGGCCTTGGCCTTCAGTGGCTCCCCGCTGCATCTTGACAAATACCGGAACTCAGATGTTGCCCATCTCATTCCCTTAACAATGTTGTATCCCAGAAACCACCTGGATCTCACATTCCACCCTCCCCGACCTCAGACTGCGCCTCCCAGCATCCCCTCACCCAAACACTCCTTCCTTGCCTATCTTGGACTAAGAGAAAGAGCAGGGACTGTCTGAGGACAGCCGCGTTCTGTACCAAAAACCAAGAGACAGAGACAGGAACAGACAAAAACCCACAAAACTTAAAACACAACCCCAGCAGGTGTATGTTGCTGCAAAACCTTCAGACCCCAGGGGTCTGGACCATGTGTACTGTATATCTTTAGTAAGGAATAGAGAATTGGCTCTGTATGTATACCTATTGACCTAAAAGCTGCTTTATCCAATCTTCAGAGAGGTGATCTGCTGCCTACATCTACCTTCAGAGGCATGCCTCCCCAGCCATCACTCCCACTTCAGCCCTCCTCCGTACTTCTCTCTGAAAGGAATTTTGTCGTGTTAACCCTAAAGAGAGTGTCCTTAATAGCAGTGAGCGCTTGGAAGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064:ENSMUST00000119254:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139091=zf-H2C2_5=PD(91.7=8.0),PF134651=zf-H2C2_2=WD(100=9.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGACAGTGGTGAGTGT
R:
TGCTTCAGCTTCTTGTGCAGG
Band lengths:
348-1833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types