HsaINT0188488 @ hg19
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:27193]
Coordinates
chr4:146681888-146684274:-
Coord C1 exon
chr4:146684242-146684274
Coord A exon
chr4:146682751-146684241
Coord C2 exon
chr4:146681888-146682750
Length
1491 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TGCGTTGCTTTCCCCGGCAGGTG
3' ss Score
11.8
Exon sequences
Seq C1 exon
CTCAGGACAGTGGTGAGTTTCAGACTCCTCTAG
Seq A exon
GTAAGGCCCAGCTTGGCGTAGGGGTTGTGTGTGCACCTGACCTGGGAATGGGCTTTATATTTCTCTCGTGTGCACTCTTCTGTGAGCTGAGGTTCAAAGGCTAACGGCGAGCTTGGCGCTGAGGAGGCCGTGCACGGTGCACTTGGTTGTGTTGGGCTCTGCTGAACACCTCTCCAGACCCTCCGAGGACAGTCCACTCCTGAGCCCTGCCCTGCAGGAGCCAAGCAAGAGCTGAGGCAGCCACTTTTGCATCTGCATTCTTTGTGGAAAGAGAGCAAACACACTACAGTTCTCATATAAGCCACTGACTCCAGCCTGGCAGCTTCTAAAAGAGAGGCTCAGCAGAGTTTGTTAACATGGCCTCACCACTCCTCGTGGCCCCTCTGGACAGCCAGGAGGGTTGGTGGTAGCGTAGCCTCACTGCAAAGGATGGAGAAACCGAGCCACAGAGAGGCCCAGGCTAGGGTGTCCAGCTCCAGCCTGACAAGGTGATGGAGCTGGGACCAGCATCCGCCCTTCCAGAATCTACCTAAATTGCCTGTAGAGACCACTCAAATAATGAACCAGTATGTCCTGAGTGCTTACCGTGTGTTAAGTACTCTACCAAGCACTGCAGAGAATGCAGAGGAAATGTAAGATATGGTCCTGCCCTCTGAGAATTTCCAATCCAGTTGGATTATTATCCTATCTCCGGCATAATCATGTATTAATAATGTCTTCGAGCTCCAGATAGCAGTTGTCTCCCTCCCTCCTCCCTTCCTCATTAGCAGATGGGCCGTTGGGTGGGCTTCCTTCTCCTCCCATGCCCCTGCCATAGTCCTCAGCTTCCTTTCCTGACAAAGAGCTAGTCCTGTAGGGAGATATGTTTTACGAGTACATAGATATGTACACATGCACACACTCACACAGAGAGACACACACAGGCCTTCTCATCCTAACAAACCCTTAATAAGCACGATTCTGACCCCTGTGACTTTCTGTTTGCTGGAGGTAGCGCTCCCCCTATAAGCTGTTCTTTAAAACCTCTTAGCCTTTCTGCGTGTGCTTGGTGTGGTGCATGAAAAGTCGATTCTTTGTGTTGCTCCCATCTAGAGGGGAGGTCAGGAGGTTTAGACCTCTGCGCTGTCTGGTCGGGAGTGGGGAGGGCTCCGAGGGGCCGGGCGGGGGCTGGAGGGGAGCACCAGCAAATTGATTCCTGGCACTTTCTCTGCTCCCCTTGGTGAGGGCTGGCCTTGCCTGTATCGGCCAAGAGACCCAGAATAGGCTGAGCGGACCTTGCCAGAGCTGCTTGTCAGCGGGGACTGCTCTGTCAGCAGGGAGAGCCAAAAAGGGCCGTTCCACCCCTGAGAGGCGGCAGGGCTGGGCTGGGCTGGGCAGGCCAGGCCTCAGACACTGGGGGGTGGTGTGAGGGAAGGCTGGTGAGGCGGCGAGAAGCGCGGCTGCCTCCGAACCTTCCCGGCTGAACCTCCCTTGCGTTGCTTTCCCCGGCAG
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCCGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACGGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGGGAGCACCGCCTGGGCAACCACTACAAGTGCGACCAGTGCGGCTACCTGTCCAAGACCGCCAACAAGCTCATCGAGCACGTGCGCGTCCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTCAACCTGCACAAGAAGCTGAAGCACGCCCCACGCCAGACCTTCAGCTGCGAAGAGTGCCTGTTCAAGACCACACACCCTTTCGTCTTCAGCCGCCACGTCAAGAAGCACCAGAGTGGGGACTGCCCCGAGGAGGACAAGAAGGGCCTGTGTCCAGCCCCCAAGGAACCGGCCGGCCCGGGGGCCCCGCTCCTGGTGGTCGGGAGCTCCCGGAATCTCCTGTCTCCCCTGTCAGTTATGTCTGCCTCCCAGGCTCTGCAGACCGTGGCCCTGTCGGCAGCCCACGGCAGCAGCTCAGAGCCCAACCTGGCACTCAAGGCTTTGGCCTTCAACGGCTCCCCTTTGCGCTTTGACAAGTACCGGAACTCAGATTTTGCCCATCTCATTCCCTTGACAATGTTATACCCCAAGAACCACTTGGATCTCACATTCCACCCTCCCCGACCTCAGACTGCGCCTCCCAGCATCCCCTCACCCAAACACTCCTTCCTGGCCTATCTCGGACTGAGAGAAAGAGCAGAGACTGTCTGAGGGCAGCCATGTTCTGTACCAAAAACAGAGAGACAAAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-ZNF827:NM_178835:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139091=zf-H2C2_5=PD(91.7=13.9),PF077546=DUF1610=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=16.5),PF139091=zf-H2C2_5=WD(100=15.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACAGTGGTGAGTTTCAGAC
R:
TGCTTCAGCTTCTTGTGCAGG
Band lengths:
346-1837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)