HsaEX0074416 @ hg19
Exon Skipping
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:27193]
Coordinates
chr4:146678779-146684620:-
Coord C1 exon
chr4:146684554-146684620
Coord A exon
chr4:146684242-146684274
Coord C2 exon
chr4:146678779-146682750
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
TTTATGTTCTAGGATGACCAAGTAGAAGAATACTTTGAAAAAATTGATAATGCCTTCTGGCTATACA
Seq A exon
CTCAGGACAGTGGTGAGTTTCAGACTCCTCTAG
Seq C2 exon
GTGCCCATTCTGCATTTATTCCACCAACCGCCCCGCTGCCATGGAGTGCCACCTCAAGACCCACTACAAGATGGAGTACAAGTGCCGGATCTGCCAGACGGTGAAGGCCAACCAGCTGGAGCTGGAGACGCACACCCGGGAGCACCGCCTGGGCAACCACTACAAGTGCGACCAGTGCGGCTACCTGTCCAAGACCGCCAACAAGCTCATCGAGCACGTGCGCGTCCACACCGGGGAGCGGCCCTTCCACTGTGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAATCTCAACCTGCACAAGAAGCTGAAGCACGCCCCACGCCAGACCTTCAGCTGCGAAGAGTGCCTGTTCAAGACCACACACCCTTTCGTCTTCAGCCGCCACGTCAAGAAGCACCAGAGTGGGGACTGCCCCGAGGAGGACAAGAAGGGCCTGTGTCCAGCCCCCAAGGAACCGGCCGGCCCGGGGGCCCCGCTCCTGGTGGTCGGGAGCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-'28-30,'28-29,29-30
Average complexity
C2
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.200 C2=0.057
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF139091=zf-H2C2_5=PD(91.7=13.9),PF077546=DUF1610=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=16.5),PF139091=zf-H2C2_5=WD(100=15.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTAGGATGACCAAGTAGAAGA
R:
GTCTTGAGGTGGCACTCCATG
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)