HsaINT0188487 @ hg38
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145763090-145765165:-
Coord C1 exon
chr4:145764988-145765165
Coord A exon
chr4:145763123-145764987
Coord C2 exon
chr4:145763090-145763122
Length
1865 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTATTTTTCTTTTGCCGTAGCTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGTCATCTGCAGATACACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
Seq A exon
GTAAGGAAAGCAAGTACAGAACCTTTTACTGCGTTGTTATTAAATACCCTTTCCCCTTCCCTACCCCGTCCCTTCCCGTGAAGGTTTTGGGAGTCATGGAGAAGGGGAGCTTGGTATGAGAGGAGTTAGTCAGGAACCCCTGCTGCCTTTAGCTGGATTGAATTAGACCTGTCCCCCTAGGGTGTCAACAGATGTCAGTAGGAGAATCCATTTTGCAAATACCCCGGGATTCAGGGCAAGAAAAAAGACACGTTGAAACAACCCAGCATGCAAGAATAGACTACACTGCTTGAGTTTTGTTCAGACTTGATTTTAATGGACTCAGGGCTTAGTGTCCCCAAGCATAAATCATACTGTGACCGAGATTCACCTTCTCTGTTTTTCCGATGGCTTGCTACATATCCTTTAAGTAAGCATTGCAACCACCCCACCCTCCAAAATTGGACAGTTTGAACAGGCAGGAAGCAACATTTTTCATGCAACGATCATGTGCTTCATGATCCTCCTGCAAACATACTGATGTCTTCTTCCCAAGATCTAGACAACGAGCATCATCTTTAACCAGTATTTTCAAGAGGCCCTTTGGTCTCAAGTGAGACCAATCAACTAATATCAAACGTACTGTGTGTCTGGCTTGATAACAGGTGCCAACAGGCACACAGGAATAAAACACCATTTCCACCCTCAAGAAATGTATGTCCTAGTACTACCTCATCTGCACAGTGAAATCAGAGTCCCTGTTCACAAGGCACTTAGGGTCTGGTAAAGAGAAAGCAGCACAGGTAGGAGGACACAGAAAGACACAGTTTTCAAGGCATAATTACTAATTCTCAGCTAAACGATCATGTTGAATGAAAAATTACATTTTACTTAACACAAGGGGGAAAAAACCTTTTGTTTTAAAACATGTTCGTCATTGAAACGCACAACCTGCCAGAGAGGTGGCATGACTCCCCTAGATGGGTGAGGAAGGGAGAGATGGAAAAGACCCTGGGAGTGGAGTGTTGGGGTCAGTGCAGGTTGGGTCCCCCCAGGCCCCTGCCTCCTCAAAAACTCCCCCACATAGAAGAGTCAGGGAACAACAGGACCTCCGTTGAACTCCATTTCGTTTCACTCTTGGGGGAGGGGGAGGGGAGGGCAGAAGGGATTGGGGAGGGGGTGATTATAATTCAAGGAAACCAGTAGATGGGAAATGCCTAGGAAGAGCTTATTTGGGGATTTGATTTGGTTTGTTCCCACTGTCCCTTTATAAATATTTGTGTGCTCTCATTTTAAAAAGAGAAACACCAGAACCATGTTTTTCTGTGGTTGGACCAGTGCTCACTGCCCTTCCCAGTAGCCCAGTCACACCCATGAACATTGCAGCCCCTGCCAGTTGTGGCTTTGCCAGTTCGCCTTTCCTCAGGGACCTCCAAAGTCCCCAGCCTCTGAAGCCATTGGGGAGAATGCACAGTGAATTCTGATGCTTTTGCTGGTACAGACACTTCCCGTGCGGTGCTAACCGTCCCCTGTGTAATAGTTTATGTTCTAGGATGACCAAGTAGAAGAATACTTTGAAAAAATTGATAATGCCTTCTGGCTATACAGTGAGTCTTTGTTTTGTTTTGTTTTGTTTCCTTTGCCATATCAGAGAATTAATTTGCCTGAGAGAGTGTCTTTAAGAAAATAACGGGAGCACGGAAAACCCTTAGCACTTTGCCTGAGCAGTGAAAGAAAGATTGAGCTGTGGGTCACAGAAATGTCCTTAAAATGAAACAGACTGCTGATGTCTAAATTGCTTTTCTGTGATGGAACTGCTTGTACTCTATATCCTGTTCATAATGCAGATCAAATAAGATTATACTATTATTTTTCTTTTGCCGTAG
Seq C2 exon
CTCAGGACAGTGGTGAGTTTCAGACTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612:ENST00000508784:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=PU(4.2=4.3)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCAACTTTGTCTGCAAGA
R:
AGTCTGAAACTCACCACTGTCC
Band lengths:
190-2055
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains